Ecal000835.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- bab1
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010000001.1:11173570-11176146[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-06 0.0022 18.7 0.0 2 38 218 254 217 260 0.88 2 4 2.5e-11 4.7e-08 33.7 0.0 3 41 269 307 267 311 0.85 3 4 0.00042 0.8 10.5 0.0 7 34 325 351 321 356 0.88 4 4 2e-11 3.9e-08 33.9 0.1 4 39 383 418 380 422 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAGTCGGGAGCGCAGTCGGCGGTGGAGGACGGCGTGCACGCGGATCAGATCAACACGTCCTACTGCTTCAGATGGAGCAATTACCAGAGTCACCTGTCCGAGGTCGTGCGCCAGCTACTCGAGGAGGAGTGCATGGTCGACGTCACGCTCTACGCCGGCGGCGAGCGCATACAGGCCCACCGGCTTGTACTGTGCGCCTGCAGCAGCCTCTTCCAGgAAATTTTGAGCCAAGTTAACGAAGAACATCCTACAATAATCTTGAGTGATATATCACCACAGGATGTGAGATCTATTGTGGAATTCAGCTACAATGGAGAAGTTAGAATTCcagttgaaaatataaacaatttattggaAGCAGCACATTCACTGAAGATATGTGGCTTAATGGAGATTGACGGTCTTGATGAATTTGAGATGAACAATGATAAAGATACATCTCTCGAGGAAACATACATTCTTAATGAGTTAACCCATGCTGATGaagaagaaatagaaatatttgaaaaatcaaatgaagaGAATGTCGATGTTGTTAATAAAcagaggaagagaaaaaacacAGGTACAGATGATGAAACTGAAGGCCATCGTGGATTCAAGCCTAGAAGACAGAGAAAGAGTGTATGTAAGAAAGATTACTCTGACGAGCAGTTGGCTAGTGCAATTGCTGATATAAAAGCTGGAAAATCGTTATTAGAAGCAGCCCAACATAATCACATTCCTAGATCTACACTTTACATGAGAGCAAAGACATTGAAACTTCCATTGAATCCCACTAGAAATGAGTATACATTAGAAGATATGAAAGGAGCTATTCAGATGGTATTagctgGATCTAGTTTACAACAAGCTGCAGATTGTCATGGAATTCCTAAAACAGTTTTGTGGAGGAGAATTCAGAAAGAAGGCTATCAAACTCCAAGAACTGATCACAGAAAAAGTTATGGAgcagaaaaaagagaagcCGCTGTAAGAGCATTACAGAGAGGAGAAGCTCTTACAAAAGTTGCTAATGAATATCAAATACCAAAAACAACGCTATTTCGAGATAAAATTCGTTTGGTAGATGAAGGAAAACTGCCGACCTCagtttggaaaaaaagaagagtggAAGGTGAAGATTATAGAAAGCGATATAGACTTGAGGAAGCAGTAGCTGCTTGCAAGGATGGTAAAATGTCTCAAGCTGCTGCTTCCGCAACTTATCAGATACCTAAAACGACTATATGGAGGAGACTTCAAAAAGATGGTAAATCCGAGGGTGAGGAATCATCTCCTAAAAAGCAGCAAAACAAAAGTGGAAAATCAGCTGAACTTGTGAAAGCTGAAGAGTTAAATGAAGCTGATTTTGAAGACTATTGTCCAgATGAGGCAGAAATGAACATAACTTATATAGACGAAAATCAGGAATTATCAGAGGATCCAGTAATAATTCTTGCAAGTGGAGATGTGGAGGACTTAAATATATCAAACAGCAGATCTATAGTTGTTGTTCAAGAAGAAACTGAcgataattttatatcatGTGGACTagaattagaagaaaattctacattttcaaaaagttaa
- Protein Sequence
- MSESGAQSAVEDGVHADQINTSYCFRWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSSLFQEILSQVNEEHPTIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLEAAHSLKICGLMEIDGLDEFEMNNDKDTSLEETYILNELTHADEEEIEIFEKSNEENVDVVNKQRKRKNTGTDDETEGHRGFKPRRQRKSVCKKDYSDEQLASAIADIKAGKSLLEAAQHNHIPRSTLYMRAKTLKLPLNPTRNEYTLEDMKGAIQMVLAGSSLQQAADCHGIPKTVLWRRIQKEGYQTPRTDHRKSYGAEKREAAVRALQRGEALTKVANEYQIPKTTLFRDKIRLVDEGKLPTSVWKKRRVEGEDYRKRYRLEEAVAACKDGKMSQAAASATYQIPKTTIWRRLQKDGKSEGEESSPKKQQNKSGKSAELVKAEELNEADFEDYCPDEAEMNITYIDENQELSEDPVIILASGDVEDLNISNSRSIVVVQEETDDNFISCGLELEENSTFSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713758;
- 90% Identity
- iTF_00713758;
- 80% Identity
- iTF_00714522;