Ebru020152.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01000860.1:17934-29782[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.54 63 5.0 2.0 2 20 89 107 88 109 0.83 2 15 8e-05 0.0094 17.1 2.0 3 21 127 145 126 146 0.95 3 15 0.055 6.4 8.1 0.8 1 23 154 177 154 177 0.96 4 15 5.8e-05 0.0068 17.5 1.5 1 19 187 205 187 208 0.94 5 15 0.013 1.5 10.1 7.6 1 23 216 239 216 239 0.95 6 15 0.28 33 5.9 0.4 1 12 280 291 280 302 0.87 7 15 0.05 5.9 8.3 3.4 1 23 343 366 343 366 0.98 8 15 0.14 16 6.8 4.9 1 21 377 397 377 398 0.95 9 15 0.0044 0.52 11.6 0.9 1 23 407 430 407 430 0.96 10 15 2.1 2.4e+02 3.2 6.7 1 21 488 508 488 509 0.94 11 15 1.8e-05 0.0022 19.1 2.1 2 23 518 540 518 540 0.97 12 15 0.00053 0.062 14.5 0.9 1 21 553 573 553 574 0.94 13 15 0.074 8.7 7.7 1.9 1 23 582 605 582 605 0.94 14 15 7.2e-05 0.0085 17.2 1.4 1 19 615 633 615 635 0.96 15 15 0.6 71 4.9 6.5 1 23 642 665 642 665 0.95
Sequence Information
- Coding Sequence
- ATGTTGTCAGTAAAAAAGGAGGACGGCGAAGAGGAGTTTCCAGCGAGTGTCAAAGCGGAGACGATCGATAATGTTTACGAAATGGAAAGGCGGGCTGCGGTTAAGGAAGAACCGATCGACGATTTTCCGGAGTACACGAACGGCGATTTGTCACGTCCACCGGAGCTGATCCTGCTGCACTGCCCCAAGTGCCTGGTGTCCTTCGAGAAGCCACCGCGCAAGAAGGTGAGCTCGTGCACGCGCTGCGACTCGCCGTACCTGCTGCAGTGCTCCAAGTGCCGGAAAATCTTCCGCAAGTACATGACCCTCTACTGCCACATAAAGGCGATCTGCGGCAACCGCAACCCCGAGGCCTTGCCCAAGGACGGCCGGGTGGCCTGCTCCGACTGCGGCACCAAGTTCTGCAGCTACGAGAATCTGCGCCGGCACAAGCGGCTCACCTGCCGGAAGCAGGCGGCGTACAAGTGCACCTCCTGCAGCTTCGTCAGCCGGTACAAGGCCTCGCTGGACCTGCACGTGCGGGGCCAGCACCTGCAGGGGAACGGCGCGGAGGAGGTGCACCGCTGCGACTGGTGCGGCAAGGGCTTCAGCCACGCGCAGACCCTCAAGCGACACGAGACCTACATTTGCGGCAAGGAGAAGAACTTCTTCTGCGGTCACTGCGACTACAAGTGCTTTCTTAAGTACCAGCTGAAGAAGCATATGAGGGCCAAGCACAAAAAGCTCTTCACCTTCGATGTTCTCGTTACGGCCTACTGCGAGAGGTGCAGTCGCCACTACAATTGCACATGCGAACAGCCGGTGACCATTTGCGTCGACTGCGTGAAGCCCCTCAGATTCCGGTGCACCTGGTGCAAGAGGTCCTACCGAACCATCGGCATCGCTAAGAACCACTTCGTCATCCACCCCCACAAGTGCGAGCGCTGCTTCAATTTTCACAGGATTAATCGCAAATGCAAAGCGAAGCTGAAATCGGCGAAAAGCTTGCAGAATCATCAGCGCTTTGTGTGCGACAAGAAGAATCTGTACCAATGTCACATGTGCGTTTTCAAAACTACCTACTTGCGCAATATCAAGAGTCACATGTTAAAGATACATAGAATCGAGGTCgacaagaaagaaaatgtctTCACTTGTAAGCACTGCCGAAAAGGCTACCGATGCTTGAGCTACTACGAGAGACACATGGAATCTATGTGTGGAAAGTTGAAGACCGAATTCAACTGCGACTACTGCACTTACAAGACTCCGAGGAGATACGAGATGGCGCAGCATTTAAACGTGCAGCATCCCTCTACCAAAACCGTCAGCAACCAAATCACTAATCCCCTGCAACCATCCCCGCTTCACCACTTAGGTCAGCTGAAATCCGTGCTGCACTGCCCCAGCTGCCAGGACGACCCCCGCCACGGTCTGTCGAAGAACCAGGCCGCCTGCCCGCTGTGCAAGAACCCCTGCGAGTACCAGTGCCAGTCGTGCAACAAGTTCTACAAGTGCCTGGAGCACCTGAACAACCACGTGTGCATGGTGCTGATGGCGACGGCGCCGCCCACGTGCACCCACTGCGGCGGCACCTTCTCCTCGCTGTCGTCGCTGCGCAACCACGTGCGCGTGAAGCACGaccggggcggcggcggcggccagccGGCCAAGCGGCACGTCTGCTCGCGGTGCAACGTGGCCTTCAGCCACCTGAGCAGCCTGCGCACCCACGAGCGAGTGGTGTGCGGCCAGGGCAGGCGGTTCAGCTGCGAGATGTGCCCCTTCGTCACGGGCTACAGCAGCTGCCTGCGGGAGCACCGCGTGCGCAAGCACGGCGAGAGCAGCGACAGCCAGAATCGCTTCGTCTGCACCAAGTGCGGCCGGGCCTACAAGACCCCGGGCCACTTTCAGAAGCACTTCGACCTCGTCTGCCTGAAGGAGTACGCCTGCGAGCACTGCCACTGCAAGACCACCAGCAGGGTGCTGTTCCACCAGCACCTCGCCGTCGCCCATCCGGACGTCCTGGGGAAGAGGAAGGGCCGGCGGCACAAAAAGATCGAAgatcattga
- Protein Sequence
- MLSVKKEDGEEEFPASVKAETIDNVYEMERRAAVKEEPIDDFPEYTNGDLSRPPELILLHCPKCLVSFEKPPRKKVSSCTRCDSPYLLQCSKCRKIFRKYMTLYCHIKAICGNRNPEALPKDGRVACSDCGTKFCSYENLRRHKRLTCRKQAAYKCTSCSFVSRYKASLDLHVRGQHLQGNGAEEVHRCDWCGKGFSHAQTLKRHETYICGKEKNFFCGHCDYKCFLKYQLKKHMRAKHKKLFTFDVLVTAYCERCSRHYNCTCEQPVTICVDCVKPLRFRCTWCKRSYRTIGIAKNHFVIHPHKCERCFNFHRINRKCKAKLKSAKSLQNHQRFVCDKKNLYQCHMCVFKTTYLRNIKSHMLKIHRIEVDKKENVFTCKHCRKGYRCLSYYERHMESMCGKLKTEFNCDYCTYKTPRRYEMAQHLNVQHPSTKTVSNQITNPLQPSPLHHLGQLKSVLHCPSCQDDPRHGLSKNQAACPLCKNPCEYQCQSCNKFYKCLEHLNNHVCMVLMATAPPTCTHCGGTFSSLSSLRNHVRVKHDRGGGGGQPAKRHVCSRCNVAFSHLSSLRTHERVVCGQGRRFSCEMCPFVTGYSSCLREHRVRKHGESSDSQNRFVCTKCGRAYKTPGHFQKHFDLVCLKEYACEHCHCKTTSRVLFHQHLAVAHPDVLGKRKGRRHKKIEDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -