Ebru013911.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01000217.1:20205-23783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.033 3.8 8.8 0.3 1 20 117 136 117 137 0.96 2 11 0.012 1.4 10.3 4.6 2 23 279 301 279 301 0.91 3 11 1.3e-05 0.0016 19.5 0.8 2 23 364 386 363 386 0.95 4 11 0.0027 0.32 12.2 1.3 1 23 540 563 540 563 0.96 5 11 0.00081 0.096 13.9 0.0 3 23 613 634 612 634 0.93 6 11 0.0032 0.38 12.0 0.1 3 23 665 686 664 686 0.93 7 11 0.0092 1.1 10.6 3.7 2 23 728 750 727 750 0.96 8 11 0.032 3.8 8.9 2.7 3 23 765 786 763 786 0.94 9 11 0.0012 0.14 13.3 0.2 3 23 832 853 831 853 0.96 10 11 0.00011 0.013 16.6 0.0 2 23 976 998 975 998 0.95 11 11 0.0076 0.9 10.8 0.6 1 23 1070 1093 1070 1093 0.97
Sequence Information
- Coding Sequence
- ATGTCGTCCAGCCAGGAGGCCTGCCTGCCAGAGTCGACGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAACGGGAATCCCGCAGGCGGCTAGTTGGCGATCCCGAAGGCATACCGAAGAAGCGGCGAAAACAGTCGACCCCCATCAAGTTCTCGACCTCGGTGAGCGTAAGCGGCGAGTGCGACGAGTCCGAGGAGGAGCCCGCCGCGAACAATCACGAGCGGCGTGATTACGAACAGCCGCAGCAGCAACACGTCCACGAGCTGGAAGGTAAGCCGTCGACCTCGCCGCTCTCTAAATCCATCCAGGGCCATCAGACGATAAAAGACGAGAATCTGAACAATGAATTCCGCTGCCAGTTTTGTAGTCAATTTTTCGGTAACCGCGGAGCGCTCGAGCTGCATCTCGAATGCGAGCACAATTTCGCTCTCTCGATGAGCAACGTCGCGATGCaacagcaccagcagcagtcGCTGATGAGCAGCCGCGAGTCACCGCAGATGCAGGTCCAGTCGCGCGTGAGCCCAGAGACGACCGGCCAGTCGCAGAGCTCGGACCCGTCCATCAGTCCGATCAATCTCTCGGGTATTAGCATTAGGAACTTTGCGGCGAGTACGTCCTGGCTGTCGGGTCAGGGACAGATGCAGGCGCAGAGCGAGGCTTCGCTCGCGAAAATGGCCGCGAGGAACAATAATCACTTTCAGCCGATACCCCCGGGTTTTCCGGGTCCCCTCGCCCAGTTCTTGACGATGCCCGGCTTCCCCATGCCGGATTCCACGCAGATCCAACGAGCGACCATGGGGCAGTTTCCAAAGATATTCAACCCCGACGCATACTGTGATCTCTGTAATAAGGAATTTTGCAACAAGTACTTTCTTAAGACGCACAAGGCTAATAAACACGGCATTTACGTTGATCCACCGAGTAGCAGCCAGTCGCAGAGTAACGACGGTGCCCCGACGAGCCCTTTTATCACCACGTCTAGTCCGATAAGCGGTTTGCCCGGAAATATGAGCATGAAAGCGGTAGACCAAACACAAAGACTCGAGAACAATGGCttgcagcagcagccgcaacAACCAACGGTACCTTGTGATATGTGCCCTAAGCGTTTCAAAAACGAGGATTCTTTGAGAAAACATAGGCTAAAAACTCATCTTAATCCGAACAACGAGTCAATCGATCCGCCTTCTTATCCATCTTCTTCTGTTGACGAAGAAAGGCAAAGTCCTGGTGGTATGGAGACACTTTTCAAGCAGGAGTACAACGTAGACCAAGACGAAAACAGTTATCCAACTACCCCAAGACCTAGTACAATGTCACCTTCCGCTTCTCAACAAATTAAAGAAGCTGTATTCAACGGTGAACGTTTACGACGCCTCGGTGTCATGAATCCCGAAGCTTTTTGTGAATTATGCTGCAAGGAATACTGCAACAAGTACTTCCTTCGAACGCACAAGCTAAAAAAGCACGGCATTTTTATTCCCGACAGCGAAAAGTCCCCAAACACTCCAGGTTCCGGACCAACTTGGCATCAAGTGCAGACCAGCCCGTTAAACCTCATAATGCAAGAAAGCCTCGGAAATGGATCGGAGTCTGGAGATCGTACGGAGGAATATGCTTGCAAGTCTTGTGGGATTCGTTTTCAAACTCAGGGGCTTTTCCATTTACATATGGAGAAAATTCATGATAGTTTAGAGCAGTCATCATCGCCTAAACTGGACCAAGAAGCCGATTCAATGGAACAGCGCACTGACTCTATTTCCGAAGATCTTCAAAAATTGCAGACGAtgatttttcaactaaatggCTTGGAATCAAACAAGGCGGCTTCCTGCGCTCTGTGCGGCAAGGACTACGATACCCCTACTGCTTTgaagaatcacatgattgcCGAACACGGTGTAGTACCGGAGAATTTGACATCACCTCAGCAACAGCCACTGTCTAGAGAAAAATCTTCACCCATTGCCGCAGTTGCTCCAGTATTCTGCTCCCTCTGCGAAAGAGAATATCCCAACCAAGAAGCTTTGAGAAAACATATCGCGGAAGATCACCAGCCGACGACGCCAACCAGTTCTACATCTCAACTTCCGTCTTCAGTAACGTCTACTCCTAAATCAAACTCTTCTCAGCCAGTTGAGCGAAAAGTGACTGCTAACATCACTCCCACTTCGAGTTACTGTGAGATCTGCAATAAAGAATTGTGTAACAAGTACTTCATGAAAACCCACATGCAAAAGATGCACGGAATTGAGATAGAAAACGGTGCTCAAATAGGTGGCGTCATATGCAACATCTGCAAAAAGGAGCTCTGCAGCAAATACTTTCTGCGGGTTCACAAGCAAAATACTCACGGTATCATCGAAGAAGGTACGTCCACCGGGAAGCAGGAGAGCTTTGAACCTCCTCAGAATTCTGAAGATGTGGCCCTGAAGCCAGAGCAGATTGGCGATCTCAGCCATCGATACATCGCTCACTTTTCGGAGGCGTGTCCACTCTGCAACGGACGTTTTCGCAGTCCGAAATGGCTGAAGCAGCATCTGGAAAGAGAACACGGCAAGGCTGGAATAGATAAGTTGCGTGAAATGGAGCAGTACCATCAATCGATACCGAAGACCCCATCTCGTAGCTCCGGCAGCTCTAAAAGTACTCACCAACAGCAATCTCATGCAAACACGAGTCTCAGGATACCGAACGGCTTCGAGCCTAATCAACAGATGAGAGCAGACTTGGCAGCTCTGAGCAATCAGGTCCTCTCCAACTTATTCGGTGGATCAGCCGACGACCAACAAGGGCAAACGTACCGCTGCTCTCAACCTCACTGCAATTTTTCAACCAACGTTTTACCACTCTTCTTCTTTCACGAGAGATCGCACAATCCTCAACAAGAAAACGCATCGATAGACAACGACCGATTAATTCAGTGTCCAATTTGTGCTCAGTCCTTCGCGCAGCCTGAATTGCTGAGGCAACACATAGCGATCCGACACGCGAGCCCGTTCCCCGCGTTGCTCTCGCAATTCCCCCTACCTATACTGGGCGAATTCGGCATGAACAGCGAGCAACAATCGCAGCAGCAGGAGTACGTTGACATCAAAGAGGAGCTGCGCCAGCCGAGTCCCCAGATCATGAACGAAATCGACACGAACAAGATGAAGAAGCCTGAAGAAAATAACGCGGTGCAAGTGCATCCGACAGGCGCATACATATGCTCCCAGTGCGGCTTTGCCACAGCGAACCTGAACCGCATCAAGAAGCACATGAGGAAGGATCACAAGTGTCTGGGCGACCCGGCCGAGGCGGCCCTGGCCGAGCTCTCCAAGACCCTGAAGGACGTCGCGAACAAGCACAAGGTGCCGGCGAGCTACGCCATGCCGCAGGACGCCAGCCTCACGCCCGACAAGACCATCATGCAGCCGTTCATCATCGAGGAGCTCGAGGGCGGCCCGCAGAACGGCAACAACGAGGAGGCCTGCCAGACCTCCAGGCGGTTCGCGCCTGCCCTCGTTTTCCTGCCGGTCAAGACGAGGGTCAGCGGCGCCCTCACGCTCTCCTTCACGCTGAATCCCGCCTGA
- Protein Sequence
- MSSSQEACLPESTEIDSEGSSCEERESRRRLVGDPEGIPKKRRKQSTPIKFSTSVSVSGECDESEEEPAANNHERRDYEQPQQQHVHELEGKPSTSPLSKSIQGHQTIKDENLNNEFRCQFCSQFFGNRGALELHLECEHNFALSMSNVAMQQHQQQSLMSSRESPQMQVQSRVSPETTGQSQSSDPSISPINLSGISIRNFAASTSWLSGQGQMQAQSEASLAKMAARNNNHFQPIPPGFPGPLAQFLTMPGFPMPDSTQIQRATMGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPSSSQSQSNDGAPTSPFITTSSPISGLPGNMSMKAVDQTQRLENNGLQQQPQQPTVPCDMCPKRFKNEDSLRKHRLKTHLNPNNESIDPPSYPSSSVDEERQSPGGMETLFKQEYNVDQDENSYPTTPRPSTMSPSASQQIKEAVFNGERLRRLGVMNPEAFCELCCKEYCNKYFLRTHKLKKHGIFIPDSEKSPNTPGSGPTWHQVQTSPLNLIMQESLGNGSESGDRTEEYACKSCGIRFQTQGLFHLHMEKIHDSLEQSSSPKLDQEADSMEQRTDSISEDLQKLQTMIFQLNGLESNKAASCALCGKDYDTPTALKNHMIAEHGVVPENLTSPQQQPLSREKSSPIAAVAPVFCSLCEREYPNQEALRKHIAEDHQPTTPTSSTSQLPSSVTSTPKSNSSQPVERKVTANITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIIEEGTSTGKQESFEPPQNSEDVALKPEQIGDLSHRYIAHFSEACPLCNGRFRSPKWLKQHLEREHGKAGIDKLREMEQYHQSIPKTPSRSSGSSKSTHQQQSHANTSLRIPNGFEPNQQMRADLAALSNQVLSNLFGGSADDQQGQTYRCSQPHCNFSTNVLPLFFFHERSHNPQQENASIDNDRLIQCPICAQSFAQPELLRQHIAIRHASPFPALLSQFPLPILGEFGMNSEQQSQQQEYVDIKEELRQPSPQIMNEIDTNKMKKPEENNAVQVHPTGAYICSQCGFATANLNRIKKHMRKDHKCLGDPAEAALAELSKTLKDVANKHKVPASYAMPQDASLTPDKTIMQPFIIEELEGGPQNGNNEEACQTSRRFAPALVFLPVKTRVSGALTLSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714631;
- 90% Identity
- iTF_00713174; iTF_00714631;
- 80% Identity
- -