Ebru023833.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01001129.1:18899-23218[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00085 0.1 13.8 0.9 1 23 272 295 272 295 0.97 2 10 1.4e-05 0.0017 19.4 0.8 1 23 301 323 301 323 0.98 3 10 1.2e-06 0.00015 22.8 0.3 1 23 329 351 329 351 0.99 4 10 0.066 7.8 7.9 1.8 1 23 357 379 357 379 0.98 5 10 8.1e-05 0.0095 17.0 1.5 1 20 385 404 385 405 0.95 6 10 0.0018 0.21 12.8 3.1 1 23 414 434 414 434 0.98 7 10 1.4e-06 0.00016 22.6 0.5 3 23 442 462 441 462 0.98 8 10 3.3e-05 0.0038 18.3 0.9 1 23 468 490 468 490 0.98 9 10 1.8 2.2e+02 3.3 8.0 1 21 496 518 496 521 0.95 10 10 0.0078 0.92 10.8 0.3 1 20 527 546 527 548 0.94
Sequence Information
- Coding Sequence
- ATGACGAAGTGCATGCCCGAGCAGCCAATGGCGGAGCAGCCGACGGAGGAGGTGCAGCTGACGGAGCTGCGCCCGGTGGAGCACTCGCGGATCAAGGTGGTCGGCAGCGACGGCGGCAATTACGAGGCGGAGGGCACAGACGGCCTGCGGGCCCTGCGCAGCTTCTCCAGCAAGCAGCCCCTCGATGAGTTCGAGCACTTCGGCGCGCGCTACTCCAGCAAGCGCAAGCACGATGAGCGCTGGCGGCACGTGGAGATGGGCCTGCGCGACGAGGCGCTCGAGGAGCAGGAGAAGGCAGCCAAACGAATTGCGAACATCATCGAGATGACCGCACCCCTGGACATCGACGAGGAAGAGTCTGAAGACGCGTACGGTGAGAACGGGGTGAACGGCGACTTCGAGTACCTCGAGGAGAGGAGCGAGATCTACGACTACCTGGGCCAGCACGAGGACTGCTCCAGCCCGGAGATCGAGGGCGCTGCCGTGCAGAGCGCCAAGTGCGTTCAGGAAGCTGCGAAGACCGCGAATTTAAAGAAAGACAAACCAGGTCGCCCCAGGGGCAGACCcaggaaaaagaagaacatCGCGAAAATGGCGAAGAAGAGTGTCCAGCCTGTGCTTAAGAGCGATAAGTCCAAGCCCGCGTCGACCGAACCCATCGAGACCGAAAAGGAGCTCCGCAACAAGATCAACGACATCATCCAGGCGAACTACATGATGGAGCAGGAGAACAACAACGTCGTGGAGAACGGCAACGACAAGCTGGAAGCTTCCGGCTCGCTCCAAGAAGAAAAACCCgaggaaaagaagaaacacCGCTGCGACCTCTGCGACGCGCAGTTCAAGGGCAGCGGCGGCCTCCGGAACCACTACAAGGTGAATCACAGCGACGGCCCCGGCTTCAACTGCAACGAGTGCGGCAAGAAGTTCCCGCTGAAGGAACGTCTCAAGCTCCACTTGCGCATCCACACTGGCTTCAAGCCCTACGAGTGCAAGACCTGCGGCAAGAGCTTCGCCCGGGGCGGCCAGCTGGTCCAGCACGAGCGCACCCACTCCAAGGTCAAGCCGTACCCCTGCCACCTCTGCTCCGGGAGGTTCACCTGCGCGGCCAACCTCGCCCTCCACGTGAAGCGCCACAACGGCCAGAAGGACCACAAGTGCGATCTCTGCAACCGGGCCTTCGTCAGGCGCGACGCCCTGAAGAAGCACCACGAGTGCCTGCACCAGGACCTCAAGTCGTTCGTCTGCAAGATCTGCAACAAAACGTTCAAGGGCCACCTGCCCCAGCACATGCGCACCCACGCCCAGGACCGGCCCCACGGCTGCGCCACCTGCGGCCAGCGCTTCGCCCAGAAGAGCCAGCTCACCGTGCACCAGAGGACCCACTCGGGCCAGCGGCCGTTCCGCTGCCTCGTCTGCTGGCAGGCCTTCGCCCACTCCACCGCCCTCAAGCTCCACATCCGCAGGCACACGGGGGAGCGGCCCTTCAAGTGCAAGCAGTGCAACTGCAACTCCCAATTCACCCAGCTGCCCCACTGGAAGAAGCACATGAAGTGCGTCCACGGCAAGACCGAGCCCTACTGCTGCCCCTGGTGCAACCTCAGCTTCAGGATAAAGAACGACCTGGACGCCCACCGGGAGGAATGCGACCAGCAGCCGTCCGACTGGGAATCCGACAGCTCCGAGGACGGCATGTCGCCCATGTCGAAGGGCAAGTTCCACAAGATGTCCCTCGAGCGAATGAGACTGCTGCTCGCGGTGTTACTCACAAGGATCGCGAAGCAGGAAACACTGGACGATCTGGGCTACGGAAAGCGGCTCATTGACGAGCTGCTCATCGACTCGCTCAAGTCCGTGGGCAAGAAGCCCGTGATGATCAGCGAGACGGTCTCGAAGTTCGAGTCGCTGCGGCAGAACCTGGAGCTCTTCCTCGAGTGGACCGTGCCGGACGTATACTGGCAGCAATTCAAGACGGAGCAGAAGAGCGTCGAGGACATCCTCGAGTTCCTCACCCTCCGTGAGTAA
- Protein Sequence
- MTKCMPEQPMAEQPTEEVQLTELRPVEHSRIKVVGSDGGNYEAEGTDGLRALRSFSSKQPLDEFEHFGARYSSKRKHDERWRHVEMGLRDEALEEQEKAAKRIANIIEMTAPLDIDEEESEDAYGENGVNGDFEYLEERSEIYDYLGQHEDCSSPEIEGAAVQSAKCVQEAAKTANLKKDKPGRPRGRPRKKKNIAKMAKKSVQPVLKSDKSKPASTEPIETEKELRNKINDIIQANYMMEQENNNVVENGNDKLEASGSLQEEKPEEKKKHRCDLCDAQFKGSGGLRNHYKVNHSDGPGFNCNECGKKFPLKERLKLHLRIHTGFKPYECKTCGKSFARGGQLVQHERTHSKVKPYPCHLCSGRFTCAANLALHVKRHNGQKDHKCDLCNRAFVRRDALKKHHECLHQDLKSFVCKICNKTFKGHLPQHMRTHAQDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHIRRHTGERPFKCKQCNCNSQFTQLPHWKKHMKCVHGKTEPYCCPWCNLSFRIKNDLDAHREECDQQPSDWESDSSEDGMSPMSKGKFHKMSLERMRLLLAVLLTRIAKQETLDDLGYGKRLIDELLIDSLKSVGKKPVMISETVSKFESLRQNLELFLEWTVPDVYWQQFKTEQKSVEDILEFLTLRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -