Basic Information

Gene Symbol
JARID2
Assembly
GCA_900475205.1
Location
UXGB01010147.1:643-5257[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.1e-23 1.5e-19 70.8 0.0 6 89 395 476 391 476 0.94

Sequence Information

Coding Sequence
ggaGGTAACGAAAAAGAGAAATCAAAAGCGAGTAGCAGTCAAGcagagaaaaatgaagcgaAGGGCAAGAGTGGCGAGGAAACAACGCAAGTGACCGAGCCTTTAAACTCGCCGGAGGAAGCTCAGAAGGACGAAGAAAAATCGCCTCCGCTGTTGGAAAGAACAACTCCAAAAAACTTCGAGCTTCCGAAAAACTTCGCAGATTTAACAAATATACAGGTGTTACCACTAGACAAACTAACAACAAGCTGGAGCAATGTAAATTGTAGCGCTTCCATAGCCGTGCAGGTTAACCTGGACGAgcagaagcagcagcagcagcagaaggACAAACCATCGACAACAGCGGAGAGCAACAGTGAGTCCAGTGGGGCGCAGAAGAGCACGGAGATTTCGACGCAAACCGACACCAACACGGacaacgacgacgacgacagcGGCCAGCTGTTTTACATACCCCTGCAGGCGGTGACGCGCAACGCCTCGGCCCAGGGAGGCCAGCAGCTCATCCAGGGAGTGGCCGTAAAGCTCGGCACCGAGGGGCCCACGGGCCCCAACCAGCGCGTCCTGCTCAAGGCGAAGCTGGTGACGAAGCCGCCGATTTCGGTTGCCCGCTGTCCGCCCATCGGAACGGTGCAACCCACTGCCAGGGCACCACAAATCGCGAGCACCGATCAAACGGACGCTCCGTCCACCTCCACGGTTGGTGCGGGGGATGCGAACTTCAAATTTCCGGCGACTGAGGAGAAGACTGCTAAAAGTTCCACTAGTAACAAACACATTCATAAGACGCCCAGTGCtgataagattttaaaatcgcCAAAGAGCAGAGAGCGGAAAATGTCATCGGACGGGGCAAAAAGTGGGAAGAAGAATCAGAAAGCGATTAACGCGGGTTTGTATGCGCCAGTGAATAAAACGACGTTTCCAAAATCGAAGGAGGCAAGCGAGGAAGCTCGCCTCGTAGAAGCTCCTACGTTTCGACCTTCGGAAAAGGATTTTCAGGATCCGCTAGAATACATTGATAAAATACGGCCAATCGCGGAGAAGTTCGGCATTTGCAAAGTAATTCCTCCatcaaatttcaaaCCTGAGTGCAAAGTGTCTGACGATATGAGATTTACGGCTTACAATCATTACGTTCACCGAATGCTCCATAGATGGGGTCCGAACGTAAAAGAAATGATGgctataaagaaatatttagccACTCAAAGTATAACGTTAACTCAACCACCATGgATTGGTGGAATGGAAGTTGACCTCCCACATTTGTATCAAACCGTACAAAATTTAGGTGGGTTGAAAGAAGTTATTGAAAAGAAGAAGTGGCAAAAAGTAGCTGACGGCATGAAAATACCAAGGTCGGCACAAGATCGAGTCACCAAATTGGAtgatatttattgcaaatatttactCCCCTACGATACCTTATCCCAAGATGAAAgagataaattgtttaaagaagTGGAAGCGGATTGGGCTAAACGAGAAAAGAGAGATCGTCAAGAAATGCAATCCAACGACAATGATGACGACGAAGAGGAAGATGCTACTGAAGAAATAGAAGAGTGCatagtaaaaGGCCGCAACATGCCGCTGAATGCCTTTTATAGGATCGCCCGCAATACTCAGCGGATGTGGTTCGGCGAAAATCAAGGTGCTCCGAGCGAGATGGAGGGTGCTTCGGCCGATGACGTCGAGACTGCATTCTGGAAGCACGTCGTTGAGAAGAAGCGCCACGTATGCGTTCATGCGGCAAGCATCGATTCCAGCGGGCGAGGCTTCGGGTTCTCCGTAGCGAAGAATAGTCCCTTTGGTCGACATCCTTGGAATCTCAAGATTCTTACGAACAATGCCGGTTCCGTGCTCAGAGCTCTTGGCCCTCAAATGGGTGTGACAGTGCCGACGCTGCACGTGGGAATGCTGTTCAGCGCGTGCTGCTGGTATCGCGATCCGCACGGCTTGCCGTGGATAGAGTACCTGCACACGGGCGCCAAGAAGATCTGGTACGGCATACCGGACCAGCAGAACAGTGCGTTTCGCAAAGCCCTGACGAAGATGTTCCCGCGTTACTGCAAGAACAAGACGATCTGGCTGCCGTCGGACACGGCCATGGTGCCGCCCGAGATGCTCGTCAGCAACGACGTGCCCCTCTGCCAGACCGTGCAGGAGCCCGGCCAGTTCATCATCGTTTTCCCCAAGGCCTTCACATCGAGCATCTGCACTGGCTACGTCGTCTCCGAGAGCGTCTACTTCGCTCAGCCCTCGTGGCTCGAGACCGCTGAACAAGTGTTTCAAgaTTTACGTAATAGTTGTGAgccttcaatattttcatttgaaagacTGTTATTTAGCATAATCAATGACTCTAGATCTCATATTGATGTACTTAAACAGattttaccTACTGTTATTAAAGTTTGTGATAGAGAAATagaaaatcgcaaaaaattaaaagaattggGTCttacgaattttgaaaaattaccactGCCAGAAAATGATAAGAAAGGTAAAGGTAAAAAGGTGAAAGAGGATGAGGGTGATTACGAATGTGATACTTGCCgagcaaatttatttgtttctctCGTGAGTAATCCCACAGACGAAAGCATTTTCTGTCTGATCCATGCCATACAATACATAGAGAAGAAGAAACAAGTTCTAAAAAATTGCACGCTTATGTATACGTATAGTGA
Protein Sequence
GGNEKEKSKASSSQAEKNEAKGKSGEETTQVTEPLNSPEEAQKDEEKSPPLLERTTPKNFELPKNFADLTNIQVLPLDKLTTSWSNVNCSASIAVQVNLDEQKQQQQQKDKPSTTAESNSESSGAQKSTEISTQTDTNTDNDDDDSGQLFYIPLQAVTRNASAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARAPQIASTDQTDAPSTSTVGAGDANFKFPATEEKTAKSSTSNKHIHKTPSADKILKSPKSRERKMSSDGAKSGKKNQKAINAGLYAPVNKTTFPKSKEASEEARLVEAPTFRPSEKDFQDPLEYIDKIRPIAEKFGICKVIPPSNFKPECKVSDDMRFTAYNHYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFKEVEADWAKREKRDRQEMQSNDNDDDEEEDATEEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQGAPSEMEGASADDVETAFWKHVVEKKRHVCVHAASIDSSGRGFGFSVAKNSPFGRHPWNLKILTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDQQNSAFRKALTKMFPRYCKNKTIWLPSDTAMVPPEMLVSNDVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFQDLRNSCEPSIFSFERLLFSIINDSRSHIDVLKQILPTVIKVCDREIENRKKLKELGLTNFEKLPLPENDKKGKGKKVKEDEGDYECDTCRANLFVSLVSNPTDESIFCLIHAIQYIEKKKQVLKNCTLMYTYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00691720;
90% Identity
-
80% Identity
-