Basic Information

Gene Symbol
pnr
Assembly
GCA_900480045.1
Location
UXGC01000042.1:470135-478445[-]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.3e-18 2.7e-14 53.2 2.6 1 34 169 201 169 203 0.96
2 2 5.2e-19 2.2e-15 56.6 6.2 1 35 228 261 228 262 0.98

Sequence Information

Coding Sequence
ATGTTCCACGGGAGCGGGAGCGGCGGCTACGGCGCTAGTTCTGAGTACCAGCAGCAGACGCAGCAAgctcagcagcagcagcaacagcagcagcaacacgCCCAGCAGCTTCAAGCTCCCGTCTATGTGCCTTCCTCCAGGCCCACCATACCCTCTTCAACCACGGCGGCCCAGTACCACTCGTTCCCCGGTTCCGCTTCGCCGGCCTGGGAGAAGACGGCGTCGTGGCAGCACGGTGTCGACTCGTACGCGCACCATGCCCTGGCTAGTCACACGGGCGGCTCGACGGGCGGGATGGGTCCGCACGCGGGCCACGCGCACCCGCACGCCGCGCACCCGCACACGGCCCACCCGCACTCCagcctcgccgccgccgccgcatcGCCCTTCTACGCCCAGAACGTCGCGATGATGTCCTCCTGGCGGGCCTACGACGGCACCGGCTTCCAGCGCGCCTCGCCCTATGACACGGCTATGGACTTTCAGTTTAGCGAGGGTCGAGAGTGCGTGAATTGCGGCGCCATTTCGACTCCTCTGTGGCGACGCGACGGAACCGGCCACTACTTGTGCAATGCCTGCGGCCTTTATCACAAAATAAATGGCATGAACCGTCCCCTCATCAAGCCCACGAAGCGCCTGATCTCCGAATTCCAGACGGCCACGAGGCGGCTGGGGCTGTGCTGCACGAATTGCGGCACGCGCACGACGACCCTGTGGAGGCGCAACAACGAGGGCGAGCCCGTATGCAACGCCTGCGGCCTCTACTTCAAGCTCCACGGCGTCAATCGACCTCTGGCCATGCGTAAGGACGGCATACAGACGCGCAAGCGCAAGCCGAAAAAGACGCCGGAGCCGAACGCAAGGCAGCCCGCCGGCGAGCACGACAACAGCACCTCCACCGCCTCGTCCTCGGAGCGCCCGGTGTACCTGGGCCACACGTCGCTGCTGTCGTCGAGTgccgcgagcggcggcgggggcggtggtggcggcggcggcggcatacCCACGGTGAAGACGGAGCCGCGCAGCTGCGACGGCGGCGTCATCGGCCAGGCCTACCCGGCCTACTACCAGCACCCCCACCAGCTGGCCGCCTCGTCGAGCGAGCACCAGCAGGCGAGCTACTACGCCGCCGCCCAGGAGGCGCCCTACCATCACCAGCACCACGTCACCGCCGCCGCCAAGCTCCTCGCCTCCTCCTAG
Protein Sequence
MFHGSGSGGYGASSEYQQQTQQAQQQQQQQQQHAQQLQAPVYVPSSRPTIPSSTTAAQYHSFPGSASPAWEKTASWQHGVDSYAHHALASHTGGSTGGMGPHAGHAHPHAAHPHTAHPHSSLAAAAASPFYAQNVAMMSSWRAYDGTGFQRASPYDTAMDFQFSEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKINGMNRPLIKPTKRLISEFQTATRRLGLCCTNCGTRTTTLWRRNNEGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKTPEPNARQPAGEHDNSTSTASSSERPVYLGHTSLLSSSAASGGGGGGGGGGGIPTVKTEPRSCDGGVIGQAYPAYYQHPHQLAASSSEHQQASYYAAAQEAPYHHQHHVTAAAKLLASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00714056;
90% Identity
-
80% Identity
-