Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.22 23 6.4 0.8 3 21 49 67 47 70 0.80

2 7 0.007 0.75 11.1 2.3 1 23 85 108 85 108 0.94

3 7 0.00042 0.045 14.9 3.5 1 23 114 137 114 137 0.98

4 7 0.81 86 4.6 0.3 2 13 143 154 142 159 0.75

5 7 9.1e-06 0.00097 20.2 0.5 2 23 183 204 182 204 0.96

6 7 1.5e-05 0.0016 19.5 0.7 1 23 210 232 210 232 0.97

7 7 1.4e-05 0.0014 19.6 0.4 1 23 238 260 238 260 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.22	23	6.4	0.8	3	21	49	67	47	70	0.80
2	7	0.007	0.75	11.1	2.3	1	23	85	108	85	108	0.94
3	7	0.00042	0.045	14.9	3.5	1	23	114	137	114	137	0.98
4	7	0.81	86	4.6	0.3	2	13	143	154	142	159	0.75
5	7	9.1e-06	0.00097	20.2	0.5	2	23	183	204	182	204	0.96
6	7	1.5e-05	0.0016	19.5	0.7	1	23	210	232	210	232	0.97
7	7	1.4e-05	0.0014	19.6	0.4	1	23	238	260	238	260	0.97

Coding Sequence: ATGGGTACTACTATATTTTTGATCAGAAGCGTAACTACCAGCACTAGTCCTTCTTCAATTCACCAAAAGAAGCTGCAAATGAATGAATGTACTGGGACAATGGTCGGGCATATCCAGGATGTCGATCCCCTAGAGCTTCAGAACTGCCACTTCTGCAAGAAGTCCTTCCTCAGCTCTCTTGTGCTGACCGAACACATCGTCGAGGCGCACCTCAGCCCTCCCAAGTCAGATCCTCCGACCCCGACGAGTGGGTTCCCTTGTTCCGCTTGCGACTTCGTCTGCCGCTCCAAGGGTTCCCTCCGTTCACACTTCATTCGCAAGCACACGAACCGCTTTGAATACCAGTGCGAGCTCTGTCCGAAGAAGTTCAAAATAAAGAGCGACCTGACGTGCCACGAGCGCACCCGTCACAAGGAGGAGCTGGTCAAGTGCGACATCTGCGGCAAGCTTTGCATGAAAAGCGCCTTGCTACACGTACCCCAGAAGTCGACGCGCTACGAGCTCCAATGCCGCGCGTGCCAGCAGCGCATGGATAAACGGGAGAAGACGTGCGCCGAGTGCGGCAAGACCTTCCCCAAGTTGACGGCGCTGAAGAAGCACTTGACGGTGCACGCCGAGAACAAGCCCTACAATTGCGTCGTCTGCCAAAAGTCGTTTGCCCTGCAGACTCACCTCACGGCGCACCTCCTCGTGCACATTGGCGACCGGCCGTTCAACTGCGACATCTGCGGCGAGCAGTTCGCGCAGAACGTGGACTTGTTCAGCCATAAGAAATCGCACCCGGATCCGCTTCCAAGCTTTCCGGCCGTACCCATGAACGACATCCTCGAGCAGTTTATCGAAGATTTCAAGCCAGAAAACCTACAGGGTAAAAAAACCGATAACGTCGAGGAGGAGGCAGAAGAGCGCGAGTgtggggaggagggggagtaTGAGGAAGAGATTGAGGAGCAGGGGCTGGTACTAGAGGAACATAACTCTGCATAG
Protein Sequence: MGTTIFLIRSVTTSTSPSSIHQKKLQMNECTGTMVGHIQDVDPLELQNCHFCKKSFLSSLVLTEHIVEAHLSPPKSDPPTPTSGFPCSACDFVCRSKGSLRSHFIRKHTNRFEYQCELCPKKFKIKSDLTCHERTRHKEELVKCDICGKLCMKSALLHVPQKSTRYELQCRACQQRMDKREKTCAECGKTFPKLTALKKHLTVHAENKPYNCVVCQKSFALQTHLTAHLLVHIGDRPFNCDICGEQFAQNVDLFSHKKSHPDPLPSFPAVPMNDILEQFIEDFKPENLQGKKTDNVEEEAEERECGEEGEYEEEIEEQGLVLEEHNSA

Sequence clustering based on sequence similarity using MMseqs2