Basic Information

Gene Symbol
JARID2
Assembly
GCA_900480045.1
Location
UXGC01001001.1:23939-35590[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7 2.6e+04 -3.6 0.0 24 57 783 817 772 830 0.72
2 2 1.1e-22 4.1e-19 69.5 0.0 6 89 1431 1512 1427 1512 0.94

Sequence Information

Coding Sequence
ATGGTTCTAAGCAGAAATGATAAGAGGAAAAGGAAAGAAGGAGACCTTGTGGATCTCGTGGATCCACTTGGAGAACCACCGAAAAGaacCAAAATACATGCACAAAGAAAATTTGCTCAGGGAGCAGTAACACCTGTATCTTATAGTCCTGTTAGTACGCCAGTtaaggataaagaaaaatccaaGTCTAATGTGTTCACAGAATTAATTACGCACAAACGACCTAATACTGAAGACTTTCTGACATTCCTCTGCTTTCGAGgtaCATCTATACTACCTCCgagcttaaatttctttagtgCAAGTTCTAGGAAAGAGAAATCTCAAGATGTTGCCAAACCAACTCCTCCTTCGGCACTTTTCTCTAACACAAATGGCACTTGTGGAAAGGCGGTACAGCCATCCAAACCAGAACAGCAAGTGTCAACGCCAACCGCGCAAAAGTCCACAACGGTCAAAGAGAAGTCGACAAATGGCCCGAAAAAGCAAGTGGCCACACCGATTCCGAAGACGATCAAACTTAAGACAACGAGCACTGCCATTCAGGCTCTAAAAAAGAAGTACCAAGAGCAGCGGCTGGCGAAGCAgcggctgaaaaaaaaattcaaaccaACGAGCATGAAGACCCGCTCTTGTGCCACCACCGATGAACAATTGCCCGATAAACCAGTAGTGAATAAATTGGTGGCCCCACGGAAACTATTGTCGAACATCGAAAGCAGGCGGCACGGCCTTCGGAGCACGGGCCTGCCCGAGAGCGAAAAGCATAGTTTACCCCTCAGGAAGCTAAAGAAGCAGTTGCCGGTTAAATTGAAGAAGAATTCCGTAGCGGCTAAAGAGGACACGTCCAGCGTTGATTCGTTCCTGCTGAGGAGTAGCGCGACTAAGAAGGCTCCAACGGTAAAGGCAGCGCCGAACAAACtgatgcaaaagaaaattgtgaAGCCTGGTAAAAAGGTGCAAGTGCGACGCGTGACTCGCTCGCGCACCGACGCCGTTCCAATTGCCAAAGCGCCGTCGCCTGTGCCTGCAAACCTTGCCAGAAGACCCACAAGAAAGACTAAAGAGGCGGCGGCCGTGTATATGGAAATACTCGGTCGGAAGCTCGTGAGCCCGGATCTCGAAAACGAGGATAACATGTCATTGGACAGCTTTCCGGAATTACCAAATGCTAGGAAGATTGCTCAGACGGAGAATGAAATCAAAGCTAAGGTCAAGTCGCTTAAAGCTACTGCTGCTACTAACGCAGCGATTGCGGCTGAtaaggaaaaagagaaaaaaccgGCAAGCAGCGCTAGCAACAGCAGTTCGAAGATTGTCAAAAAGAAGGTAGTTAAAGCTACGTCACCAGTGAAAACTAAGAGATTGGTAAAAGTGCAGAGGTATTGTGAACTCAACAGTGATGAAGAATCTGTGAGTTCCAAAGAGTCGAACGAAGAAGTGAAAACAAGACGATCGGCGCCAGTAGCTACGGCCAagacaaaaaaaggagacaGCCGAAATTTAAGATCAAGTCGCAGTTTAGCCTCTCGAAAAAGCCTTCCAAAGTCAAACGAAGTACCGCAAACGGTTAGCAATGAATCGACCAAAGCAACGAAAAATACCGAAGCACATAACGTTACGAAAAATAAGGAAGGCAGCGGTGCTAAGGATAACTCAAGCAAAGAAACGCCAAAAGAGAAGACAGTAGCTGTTGTACCGAAGAGAAAACGTGAGTCAAATGCTAACgacaaagagaaagaaaaggacaCTGCTGCAAAGCAGAAAACTGATTCGaacaagaataaaaacaaagcaTCCGAGGCAGCAGTTGAGTCTGAAGAAGAGAGTCTCGAAGCAGCGCTTAACAAACTGAAGAAGCGGAAGGAGAACGAGAAAGAAGAGAGCGCGAACGAGAAAAAGACGATGGAGCCGAAATCTGCGAAGGCAGCGACCACGAGCACGGCAACGATGACGAACAACGCTGAGACCGCGAAACCTCAGCCCGTCGAGGCGCTCAAGAACCAAGCTGCGAACGAAGCGACCACCGCGAAGATGTCCGACGACGAGGAGTCCTTCCGCGGTTTCACCAAAAAGGCCATTTCCAAGGTGCTCAACAGCTGTCAGACGCACGTCAAAGCCAACAGCTTGCTGGAAAATCTCGACAGCAAAACGAACATCTTGAAGACGCACGAGATTTTGCCGAGTCCCGTCGGGTCGAAAGACATCAAGAAGGCAGATATTAAAACGTCAGCTGCCGTGCTGTCCAGCATCAAGACCATGGATCAGCTGATCGCTGGTAGCGCAACTAGCACAACAGCTAATGCCGCTGTTAAGCAGGAACCTGATTTCGGTGAAATGAAGGTATCGTCGGCCTCGGGCGCGTCGCTGAACATCTTCGACATGCCGCGCGCGCTGACGAGCCACGGGCGCAAGGAGCGCGTCAACATGTCGGCGGAGCAGATCGAGAAGTGGCTGAACGAGAGCTCTCTGGCCAAGGAGGAGAGCAAGGTGGAGATGGAGAGCGTCGGGGGCTACGGGGCCGGCTACAAGTACGACGCGTCCGATCGGCCGCCCCCCAGCAGCCACATCTCCATATCGCCGAAGATCCAGCACCTGGTGCGCCCGGTGAACGTCACCCTGTCGAAGCTGTCGGATAGACTGAAGAAGGCCTCCACGGCGATGGCGAGCCACCGCATGCCCACGGCTTTTTTGGTCGGCGGCCAGGTCACGCCGGTCAAGCCGCAGCCCGGCAAGCCCGCGGCGGACACCGCCCCCGCCGTCAAGGAGCGCAAGGAGGCGCCGCCCTGCCCGTCGCCCGGCACCAAGGCGGCCAAGGACCCGCCCGTCGCCGATGATCCTGGCGACAGCGACGCAGTCTCCAAGTCCGACGCGAATTCGGTGGGCGACTCGTCGGAGAAGAAGTCGCTGAACAGCCCCGAGAAGAAGGTTTTTTTTCATCAGCGGAAGCCCTTTCTGCCGAAGGTGAAGGAGCGCAAACCCGTGAGCAGCACCTCGGCCTTCTCGCCCGAAAACGAGAGCAGCGTTTATGCGTTCGAGAGCGAAGCCGAGGTGCCGGTGAGCACGCCATTTCGCAGAAAGGCAAAAGATGCTACTGCCAAGGAGCATTCGGgaGGTAACGAAAAAGAGAAATCAAAAGCGAGTAGCAGTCAAGCagagaaaaatgaagcgaAGGGCAAGAGTGGTGAGGAAATAACGCAAGTGACCGAGCCTTTAAACTCGCCGGAGGAAGCTCAGAAGGACGAAGAAAAATCGCCTCCGCTGTTGGAAAGAACAACTCCAAAAAACTTCGAGCTTCCGAAAAACTTCGCAGATTTAACAAATATACAGGTGTTACCACTAGACAAACTAACAACAAGCTGGAGCAATGTAAATTGTAGCGCTTCCATAGCCGTGCAGGTTAACCTGGACGATcagaagcagcagcagcagaagGATAAACCATCGACAACAGCGGAGAGCAACACTGAGTCCAGTGGCGCGCAGAAGAGCACCGAGATTTCGACGCAAACCGACACTAACACGGacaacgacgacgacgacagcGGCCAGCTGTTTTACATACCTCTGCAGGCGGTGACGCGCAACGCCTcggcccagggtggacagcaGCTCATCCAGGGAGTGGCCGTCAAGCTCGGCACCGAGGGACCCACCGGCCCCAACCAGCGCGTCCTGCTCAAGGCGAAGCTGGTGACGAAGCCGCCGATTTCGGTTGCCCGGTGTCCGCCCATCGGAACTGTGCAACCCACTGCCAGGGCACCTCAAATAACGAGCACCGATCAAGCGGACGCCCCGTCCACCTCCACGGTTGGAGCGGGAGATGCAAACTTCAAATTTCCGGTGACTGAGGAGAAGACTGCTAAAAGTTCCACTAGTAACAAACAAATTcACAAGACGCCTAGCTCtgataagattttaaaatcgcCAAAGAGCAGAGAACGGAAAATGTCATCCGACGGGACAAAAAGTGGGAAGAAGAATCAGAAAGCGATTAATGCGGGATTGTATGCGCCAGTGAATAAAACGACTTTTCCAAAATCGAAGGAGGCAAGCGAAGAAGCTCGCCTCGTAGAAGCTCCTACATTTCGACCTTCGGAAAAGGATTTTCAGGATCCGTTAGAATACATTGATAAAATACGGCCAATCGCGGAAAAGTTCGGCATTTGTAAAGTAATTCCTCCatcaaatttcaaaCCTGAATGCAAAGTGTCTGATGATATGAGATTTACGGCTTACAATCATTACGTTCACCGAATGCTCCATAGATGGGGTCCGAACGTAAAAGAAATGATGgctataaagaaatatttagccACTCAAAGTATAACGTTAACTCAACCACCATGGATTGGTGGAATGGAAGTTGACCTCCCACATTTGTATCAAACAGTACAAAATTTAGGTGGGTTGAAAGAagttattgaaaagaaaaagtggcAAAAAGTAGCTGACGGCATGAAAATACCGAGGTCGGCACAAGATCGAGTCACCAAATTGGATGacatttattgcaaatatttactCCCCTACGATACCTTATCCCAAGATGAaagagataaattatttaaagaagtgGAAGTGGATTGGGCTAAACGAGAAAAGAGAGATCGTCAAGAAATGCAATCCAACGACAATGATGACGATGAAGAGGAAGATGCTACTGAAGAAATAGAAGAGTGcatagtaaaaGGCCGCAACATGCCGCTGAATGCCTTTTATAGGATCGCCCGCAATACTCAGCGGATGTGGTTCGGCGAAAATCAAGGTGCTCCGAGCGAGATGGAGGGTGCTTCGGCCGATGACGTCGAGACTGCATTTTGGAAGCACGTTGTTGAGAAGAAGCGCCACGTATGTGTTCATGCGGCAAGCATCGATTCCAGCGGGCGAGGCTTCGGGTTCTCCGTAGCGAAAAATAGTCCCTTTGGTCGACATCCTTGGAATCTCAAGATTCTTACGAACAATGCTGGTTCCGTACTAAGAGCTCTTGGCCCTCAAATGGGTGTGACAGTGCCGACACTACACGTGGGAATGCTGTTCAGCGCGTGCTGCTGGTACCGCGATCCGCACGGTTTGCCGTGGATAGAGTACCTGCACACGGGCGCCAAGAAGATCTGGTACGGCATACCGGATGAGCAGAACAGTGCGTTTCGCAAAGCCCTGACGAAGATGTTCCCGCGTTACTGCAAGAACAAGACGATCTGGCTACCGTCGGACACGGCCATGGTGCCGCCCGAGATGCTCGTCAGCAACGATGTGCCCCTCTGCCAGACGGTTCAGGAGCCCGGCCAATTCATCATCGTTTTCCCCAAGGCCTTCACATCAAGCATCTGCACTGGCTACGTTGTCTCCGAGAGCGTCTACTTCGCTCAGCCCTCGTGGCTCGAAACCGCTGAACAAGTGTTTCAAgaTTTACGTAATAGTTGTGAGccttcaatattttcatttgaaagaCTGTTATTTAGCATAATCAATGACTCTAGATCTCATATTGATGTACTTAAACAGattttacCTACTGTTATTAAAGTTTGTGATAGAGAAATagaaaatcgcaaaaaattaaaagaattggGTCTtacgaattttgaaaaattaccactGCCAGAAAATGATAAGAAAggtaaaggtaaaaaagtgaaagaggATGAGGGCGATTACGAATGTGATACTTGCCGagcaaatttatttgtttctctCGTGAGTAATCCCACAGACGAAAGCATTTTCTGTCTGATCCATGCCATACAATACATAGAGAAGAAGAAACAAGTTCTAAAAAATTGCACGCTTATGTATACATATAGTGAGAATGAATTGAACGACCTCATTCATAAATTGAAGGACAGGATCGAAGCCAAATCTAAAAAGACTAATCAAATGAAACAAGCTAAATAG
Protein Sequence
MVLSRNDKRKRKEGDLVDLVDPLGEPPKRTKIHAQRKFAQGAVTPVSYSPVSTPVKDKEKSKSNVFTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFSASSRKEKSQDVAKPTPPSALFSNTNGTCGKAVQPSKPEQQVSTPTAQKSTTVKEKSTNGPKKQVATPIPKTIKLKTTSTAIQALKKKYQEQRLAKQRLKKKFKPTSMKTRSCATTDEQLPDKPVVNKLVAPRKLLSNIESRRHGLRSTGLPESEKHSLPLRKLKKQLPVKLKKNSVAAKEDTSSVDSFLLRSSATKKAPTVKAAPNKLMQKKIVKPGKKVQVRRVTRSRTDAVPIAKAPSPVPANLARRPTRKTKEAAAVYMEILGRKLVSPDLENEDNMSLDSFPELPNARKIAQTENEIKAKVKSLKATAATNAAIAADKEKEKKPASSASNSSSKIVKKKVVKATSPVKTKRLVKVQRYCELNSDEESVSSKESNEEVKTRRSAPVATAKTKKGDSRNLRSSRSLASRKSLPKSNEVPQTVSNESTKATKNTEAHNVTKNKEGSGAKDNSSKETPKEKTVAVVPKRKRESNANDKEKEKDTAAKQKTDSNKNKNKASEAAVESEEESLEAALNKLKKRKENEKEESANEKKTMEPKSAKAATTSTATMTNNAETAKPQPVEALKNQAANEATTAKMSDDEESFRGFTKKAISKVLNSCQTHVKANSLLENLDSKTNILKTHEILPSPVGSKDIKKADIKTSAAVLSSIKTMDQLIAGSATSTTANAAVKQEPDFGEMKVSSASGASLNIFDMPRALTSHGRKERVNMSAEQIEKWLNESSLAKEESKVEMESVGGYGAGYKYDASDRPPPSSHISISPKIQHLVRPVNVTLSKLSDRLKKASTAMASHRMPTAFLVGGQVTPVKPQPGKPAADTAPAVKERKEAPPCPSPGTKAAKDPPVADDPGDSDAVSKSDANSVGDSSEKKSLNSPEKKVFFHQRKPFLPKVKERKPVSSTSAFSPENESSVYAFESEAEVPVSTPFRRKAKDATAKEHSGGNEKEKSKASSSQAEKNEAKGKSGEEITQVTEPLNSPEEAQKDEEKSPPLLERTTPKNFELPKNFADLTNIQVLPLDKLTTSWSNVNCSASIAVQVNLDDQKQQQQKDKPSTTAESNTESSGAQKSTEISTQTDTNTDNDDDDSGQLFYIPLQAVTRNASAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARAPQITSTDQADAPSTSTVGAGDANFKFPVTEEKTAKSSTSNKQIHKTPSSDKILKSPKSRERKMSSDGTKSGKKNQKAINAGLYAPVNKTTFPKSKEASEEARLVEAPTFRPSEKDFQDPLEYIDKIRPIAEKFGICKVIPPSNFKPECKVSDDMRFTAYNHYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFKEVEVDWAKREKRDRQEMQSNDNDDDEEEDATEEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQGAPSEMEGASADDVETAFWKHVVEKKRHVCVHAASIDSSGRGFGFSVAKNSPFGRHPWNLKILTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEQNSAFRKALTKMFPRYCKNKTIWLPSDTAMVPPEMLVSNDVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFQDLRNSCEPSIFSFERLLFSIINDSRSHIDVLKQILPTVIKVCDREIENRKKLKELGLTNFEKLPLPENDKKGKGKKVKEDEGDYECDTCRANLFVSLVSNPTDESIFCLIHAIQYIEKKKQVLKNCTLMYTYSENELNDLIHKLKDRIEAKSKKTNQMKQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00714164;
90% Identity
-
80% Identity
-