Eocc036883.1
Basic Information
- Insect
- Eurois occulta
- Gene Symbol
- -
- Assembly
- GCA_950022335.1
- Location
- OX465507.1:9625323-9630580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.016 1.7 10.4 3.8 2 21 162 181 161 182 0.93 2 15 9 9.4e+02 1.8 0.7 1 23 188 210 188 210 0.80 3 15 0.003 0.32 12.7 1.3 1 23 215 238 215 238 0.96 4 15 0.003 0.32 12.7 1.0 2 23 244 265 243 265 0.95 5 15 0.19 20 7.0 1.8 3 21 270 288 269 289 0.93 6 15 0.0079 0.83 11.4 0.8 2 23 331 353 330 353 0.95 7 15 0.0059 0.62 11.8 0.5 1 23 386 408 386 408 0.98 8 15 0.0073 0.77 11.5 2.5 1 23 414 437 414 437 0.97 9 15 0.0014 0.15 13.7 1.0 1 23 446 469 446 469 0.96 10 15 0.012 1.2 10.8 6.8 1 23 479 501 479 501 0.98 11 15 0.0069 0.73 11.6 0.1 2 23 686 707 685 707 0.96 12 15 0.00039 0.041 15.5 5.1 2 23 713 735 713 735 0.96 13 15 0.0015 0.16 13.7 1.5 1 23 769 792 769 792 0.96 14 15 6e-05 0.0063 18.1 1.3 1 23 798 820 798 820 0.97 15 15 0.011 1.1 11.0 1.1 5 23 830 848 829 848 0.97
Sequence Information
- Coding Sequence
- ATGAGCCGGCAAGTGGATATAAAGGCGTTAGTGTCCCATATAGTGCGTGGAGATGGGTCCGATAGATGTCGAATATGTATGGGCGATACAAGCGAGGGGCAAGTTCATTTAGAAGATACGGTCATGATGGACGGAGACAAGCCTGTGACGCTTGCTGAGCTGTTAGAAGTCATCACAGGAGTTGAGGTGCGGCTGGATGATGACCTGCCCCTAGGACTGTGCTCCGTATGCTCAGTGTCAGCCCTCCAAGCAGCTGAGTTCAGGACCCAGTGCCGAAGAGCTGCCATACAGTGGGACACCACCCTGGAACTGCTGAGCAGTATTCCAGAACAAACAGCCTTTGACAACCGAATCATAGCTATAGTCACTGAGAATACTATCTGTATTACTAAGCAGGAAAAAGTGGAAAAAAAACCGGCTTTTACGTCACCGAACTTGCCAAAGCTGAAAAGCAAGTCTGAgaatgttaaaagtaacaaatGTCAGTGCCCGGGCTGTGGTAAGCGGTTCTTGTATGCGCAACATTTGTGTCAGCATTTGAAGGAGTCCTCCAACAACCAACATGCTTGCCACATTTGTGCTAAAATTATGACGAGACAAGAGTTGATTTCGCATTTGATTGAAACACATAATAGAGAGCCGTATGATTGTAAGAAATGTCCTGCTATGTTCCGAACTTATATGCAGTATAAGATGCATTTATCAAAGGCCCATGCATCTGGCGCATGTACTTGTGGAGAATGCGGCCGTAACTTCCAGAGCCAACAGGCTTATTACGCCCATCTTTCAGTCCACACCCCAAAAATATGTCCTGGCTGCGATGAGCTTTTTAGAAACCAGAAATGCTACCACTACCACGTCAAACGGTGCTGTAACCTTGACAAAACGCGCTTAGATATTCACAAAACTAAAAACAAGGCTACCATAACGGTGAAAAAGAAGAATAAGAGCATCAAAGTTGGTATGAGAGGGAGCGCCGACTCAGAATGCATTTGTGATTACTGCAAAAAGAAATTCGCTGGAAAGAAGTTTGTCGCTGCACACATTCAAATCGTGCACACGAAAAATACTCATAGACCTTGTATTTACTGCGGGAAATTACTTGCAGCGGCTCATATGACCACACATGTAAAAAAACACGAGTCAACTGAGTCTTACCAATGTGGGCACTGTGGTATTATCCTAAAAACCAAGTTGGGGTACATACAACACGTCCGCTTACACACTGGCGAACGTCCATACCCTTGCAAGTTCTGCGGAGAATCTTTCTCAGCGTCTTCTCGACGGTCAGAACATATCCGAAAATGTCATCGAGAGACTGACATAGTTCTGAAACACGCTTGCGAGTTCTGTCCAGCAAGATTCAGACTGCCTTATAGGCTAAAGAAACACATAAATACGGTCCATGGTAAAGGGAAACCGCAATCGATGCAATTTGAATGTAATGATTGTCATCAAAAGTTTACCAGTTGTAGGGGACTGCTGTACCACAGTAGAAAGCACCAGATTGAGAATACTCCTGCAAAGATACCGAGATTGAAGGAGATCGAGCACACATCACCGCTGCCTAACAAACTCTGCCTCCGATGCAATCGGGACCTTACATCAATAATACCCTTCATAAAACGTTGCAAGGAGTCCGCAAAACGTTGGAATCAGATCACTGACTATTTATACACGCTAGAGCCctcaaaaaaagcaaaaaatgtttatatagaAATTGGTAATGACATAGAAACGTATACAGATACTTCTAGATGTCTCGTTAGTAAGATGGCAACGAAAAAAGAGGCTTTACAGGGTTTTAAATTGCGGCTACGACGGCAAACAATTTACAGAAGTCGATTAGTTCAACATGAAACAGTGGGTCAAGAGGTAACGGCTATAGGAAAACATAAAATGACTTGCCCAAATTGTGCCGCCCAGTTTCAATGCCTCTTTAGATTCAATAAGCACCTACGTGAATTTCGCCAAAAAGTATGCAGGGTCTGCTTCGAAATACTAGACATACCCGCATTTGTCGAGCATTGCAACGGTCACAATATAACTTTAATCTCCTGCCCGATTTGCTTAGAAAGTTTCGAAAAAGATTACGCTCTTAGAGCACATAAGCTGAAACACGAGAAAGGTCCAGAAGAATGCCTGGAATGTCATGAAACCTTTGCAAATTGTGgtcatttaaataaacatatgaACATCAAACATAAACCCATTGTCTGCGGATGCGGTAAAAAACTTCCGAACCGCATTTGTTTCTTGAAACACAAGCAAATATGTGTCAAACATAAAGATATATCCTCGGTATTCATTTGTGATTACTGCAAAGTAGAATACACAAAGAAGAAGAGTTTGAACCtccatattaaattaaaacacaccGTTGGAAGAGTCTTCCAATGTGACAAATGTGGGAAACGGTTATCAAATCGGGCGCATTTGATAGAACATGGAACTACTCACGAGAAAATCACTGACAGATATGTGTGTTACTGCGGTGCCAAGTACAGCTCGAGACGTGGTTATGAAAGGCATATGAAAAAGCATTTGGAAGGAAAAAAGATGAGGGATTTAAAACGGAAGATTAAATCAAACACCAATAACTTGATAAAGACAGAAGTATGA
- Protein Sequence
- MSRQVDIKALVSHIVRGDGSDRCRICMGDTSEGQVHLEDTVMMDGDKPVTLAELLEVITGVEVRLDDDLPLGLCSVCSVSALQAAEFRTQCRRAAIQWDTTLELLSSIPEQTAFDNRIIAIVTENTICITKQEKVEKKPAFTSPNLPKLKSKSENVKSNKCQCPGCGKRFLYAQHLCQHLKESSNNQHACHICAKIMTRQELISHLIETHNREPYDCKKCPAMFRTYMQYKMHLSKAHASGACTCGECGRNFQSQQAYYAHLSVHTPKICPGCDELFRNQKCYHYHVKRCCNLDKTRLDIHKTKNKATITVKKKNKSIKVGMRGSADSECICDYCKKKFAGKKFVAAHIQIVHTKNTHRPCIYCGKLLAAAHMTTHVKKHESTESYQCGHCGIILKTKLGYIQHVRLHTGERPYPCKFCGESFSASSRRSEHIRKCHRETDIVLKHACEFCPARFRLPYRLKKHINTVHGKGKPQSMQFECNDCHQKFTSCRGLLYHSRKHQIENTPAKIPRLKEIEHTSPLPNKLCLRCNRDLTSIIPFIKRCKESAKRWNQITDYLYTLEPSKKAKNVYIEIGNDIETYTDTSRCLVSKMATKKEALQGFKLRLRRQTIYRSRLVQHETVGQEVTAIGKHKMTCPNCAAQFQCLFRFNKHLREFRQKVCRVCFEILDIPAFVEHCNGHNITLISCPICLESFEKDYALRAHKLKHEKGPEECLECHETFANCGHLNKHMNIKHKPIVCGCGKKLPNRICFLKHKQICVKHKDISSVFICDYCKVEYTKKKSLNLHIKLKHTVGRVFQCDKCGKRLSNRAHLIEHGTTHEKITDRYVCYCGAKYSSRRGYERHMKKHLEGKKMRDLKRKIKSNTNNLIKTEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -