Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.5e-06 0.00027 22.4 0.8 1 23 113 137 113 137 0.99

2 6 0.00046 0.048 15.3 0.4 1 23 143 167 143 167 0.98

3 6 0.00014 0.014 16.9 0.4 1 23 173 197 173 197 0.96

4 6 4e-07 4.2e-05 24.9 1.3 1 23 202 226 202 226 0.97

5 6 9.2e-06 0.00097 20.6 3.5 1 23 232 256 232 256 0.98

6 6 0.001 0.11 14.2 0.0 4 23 267 286 267 286 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.5e-06	0.00027	22.4	0.8	1	23	113	137	113	137	0.99
2	6	0.00046	0.048	15.3	0.4	1	23	143	167	143	167	0.98
3	6	0.00014	0.014	16.9	0.4	1	23	173	197	173	197	0.96
4	6	4e-07	4.2e-05	24.9	1.3	1	23	202	226	202	226	0.97
5	6	9.2e-06	0.00097	20.6	3.5	1	23	232	256	232	256	0.98
6	6	0.001	0.11	14.2	0.0	4	23	267	286	267	286	0.96

Coding Sequence: ATGGCCGCATGGCTCGGTGACAGCGGTCGCTTCGATATCTCAacacaaaacacttttaaaccCTTTACGATAGGGCATTATTCAAACGATAATAACACTGATTTAAAGTACCTTGACTTGGATAGCAAGTTTGATAATTTCCAAGCGCGTAATTACGACAAAAAAGTTTCTGAAAGCAGCGTGACGTCGGACAGCGAAATAATTCCCAAggacaaaaataaagaaaatcttATTGGATTTTCTCCTCATGATGACACAGTATCAGATATGCAAAACTCGGACGTCACATCTAGCATGGATAAGAGCAAGAGGAAACAAGAAGACAGCACCGCGAGGTACAAATGTGAATATGAGGGTTGTGAACGCACTTACAGCACTGTTGGAAACCTGCGcacacacatgaaaacacacaaGGGTGAATACAGGTTCAAATGTCCGATGCAATCATGTGAGAAAGCATTTCTGACGTCATACAGTCTGAAGATTCACATACGCGCGCACACGAAGGCGAAACCCTTCGCTTGTACCATTGGCGGCTGCAGGAAAGCGTTCAATACTTTGTACAGGCTAAGGGCACATCAACGGCTGCACAGCGGCGACACGTTCAACTGCAATGCGGACGGGTGCACGAAGTTCTTCACGACACTTAGCGATCTAAAGAAACACATACGAACACACACACAGGAGAGGCCATACAAATGTCGAACAGAAGGCTGCGGCAAGTCGTTCACCGCATCGCATCACCTGAAGGCGCACGGGCGCACGCATTCGGGCGCGCGCCCCCATGCGTGCATAGAACCCGGCTGCGGGCGACTGTTCTCTACCGCTACCAGTCTCAAGGCGCATGCCATGAAGCATCAGGTGAGTTTCATCAGATGTTGA
Protein Sequence: MAAWLGDSGRFDISTQNTFKPFTIGHYSNDNNTDLKYLDLDSKFDNFQARNYDKKVSESSVTSDSEIIPKDKNKENLIGFSPHDDTVSDMQNSDVTSSMDKSKRKQEDSTARYKCEYEGCERTYSTVGNLRTHMKTHKGEYRFKCPMQSCEKAFLTSYSLKIHIRAHTKAKPFACTIGGCRKAFNTLYRLRAHQRLHSGDTFNCNADGCTKFFTTLSDLKKHIRTHTQERPYKCRTEGCGKSFTASHHLKAHGRTHSGARPHACIEPGCGRLFSTATSLKAHAMKHQVSFIRC

Sequence clustering based on sequence similarity using MMseqs2