Basic Information

Gene Symbol
jarid2b
Assembly
GCA_950022335.1
Location
OX465477.1:24535302-24549703[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-20 4.9e-17 63.2 0.0 13 89 1167 1240 1143 1240 0.88

Sequence Information

Coding Sequence
ATGTTAACACAACCGTACGCGGCGGGAAACAAGACGCCAATGAGGCATAATGATGGCGGCTCACTAAGTGCTCCCCCACTCTGCCAGGTGGTGGGGTTGGAAAAGAAGGATAAGTACAGAAAGAAAGAGACGGATATAGATGGCGGGAAACGTAGTGCCTATCTCAAACTAAATAAGCTTCGAATAACGGAATGTCAAGATGCGAGGGAGTCGACGACACCTGTTAAGAGACCCAAACTACAAACAGCTAAAAAATCGAAAGAGTATAAACGAGTACACGCAATGTCGTTGCGTTCACGGCGCCTTAGCAACCTTGaactaaaaattattgttgaaagTGGTGCACCTCTGAGAAAGGTCACTTTTAAGCGGAAAAGGAACTCTTCTGACGAAGATGAACCCCTCatataccaaaaaaataaaaacaagaaagcTTTGCAAACGAAACATTCGCTGAAACGGACTGCTGCCAGGGAGAGTGCTCCCTTAGTGGGCATACTTAAGCATAGCCCTCCCATGGTGGAGATACCTGATCAGTACGTACCTAAAGTCGGCACTGCTAAGCAGAGCGTTCCCAAGAAGCAAAGCGCTAACCTGGTGACCACTCCTAAACAAAACGCTCCCAAGGTGAGCACTCCTGATCACAGCTTAAGCAGCAAGAAAAAGCTTCGGAGAACAAGCCCGTCCGAGAAAGCTCTAAAGACGAAACCTAAGCGGAAAAGTACACCTGAACAAAGTACTCCCGAGAAATCTCCAAAGAAGAAACTACCCCAGAAGAgcataaaaaaggaaatatcaCCCATACAGGTCACTCCCCAGAAGAAGAATTCCGCCCCAGCGCCTGTTATACCCGAGACGTTGGTCATTGTCAGCGATAAACCAGAAGATAATCAGACTGATGATTGGGTAGACTCCGATGTTAGTTCTGCCGTGAACCGGGACACCCCAGATGACTGGGTTATCCCGTACGTCCCGGATGACCCACTCGACCAGGACCAGGGAGGTGCCACCCTCCCTCAAAAGGACGTGCTTCCTGTAAATGATATGGTTGCCGAAAACGGCGCGCTCGCAATTGATGGCATTCTTGCCACTGAGAGCACGCTCGGCATAGAAGACACGCGCGCCCTCTGTGGCAATCCTGGCACAGATGGCGCGCGCGCCTCTGATGTCATGCTCGCCACAGAGAACGAGCTCGCACTGGAAGatacgattgtcaaagatcacGACTTCGCCATAGATAGAATGCTCGTCACAGAAAACGAAACTGTTGCCAAAGAGGGCATTGTCGCCAACAAGGAGGTCGCCATTGATGGCATTCTCGCCACTGAGAGCACCCTCGACATCGATGACATGATAGGCACAGAGGATGCACGTGCCTTTGATGACACTCTCGCAACACGAACACACAACAGGACACAGGAACAGGACGAGCTTGCACTAAAAGACACGATTGCCAAAGAGTGCATGCTCGCCAAAGAGGGCGCACTAGATGTAACTGTTGCTAAAGAGGGCTTTTTCGCCATTGATGGCACTGACGCCACTGAGAGCACGTTCGACAGAGATGGCGGCGCCGCGGATGAGGCGTTTATACCGTCCGTCCAGGTTATTCCGTCTTTGAACGAAGATGAGGATGAGGATGAACCATTTGAACGTGACATAATTAGGTTACGGTTTGAGGACAGTTCCGAAGATGAAACGCCAGAGATAGTCAAGGTTGATCACTTCGATGAGCACGTGGGTGATATATCGGAATTCTTGGAGGGCTCGGTTAAGCCTTATGACCCAGACGTCACTAGTGACGTGCCTCTCGAGAATGCCACTCAGGACCTCCTCGGGATACGTGTGGTTTCTCCAGAACCTGGACCAAGTGGCATGCAGTACAAATTTAGCGTATACGATTCAGAAAGTGATGAAAAAATAGAGTACTACAGTAATGAAAAACTCTATTTAGGAGATGACATACCTGAACAATACTTACAAGAAGTTTTCCATAAAACAGCTCAGAACTTAGAGCTTGAGCGTAACCTACAGCTTCAGAAGAAGACTTGTGTTGGAGCATCGTTGCGCTCAGACCGTGACGTTATAAATGCATCTAATGAACTATTGGACTCCTGTTGCAAAGTGTGTAAGCCCTGCATCAGGATTGAGAAACTGCTGAAAATTTCTGCATTAATTAGTACAAAAATAGTATCAAGGAGCAATAGAAATGGGCGGAATAACAATGCCGAGGATCCAGAGAGCGATCTAGTAGAAACAGAACAGGATGAGCACGAAGAACCTTTAACGAAGGCAGACCAATACGAAGAACTTTATTTGCTTCTGCCGAAACTTTCTCGTATAATGTTGAAAATAGTAAGGAACGTCGAACACGGCAGACAGTTCTTGGCGGTTTCTTTTATAGCGACAAGTAAGTCTCTGAAAAGTGATTTTTTACTGGAGGAAAAAGAACACATTTTGGATAGTTTAATTGAGACTCTGACAGTCGGTCGACTGACAAATGACAGTATACAGGGTCGAAACGACCATGTACAGATTCGATTCAAACTTCCAGAAGGTCGAAACGACAATGCAGAGGCTCGAAATGATAATGCAGAGGCTCGAAATGATAATGCAGAGGCTCGAAATGACAATGCAGAGGTTCGGATCGACACAGAGGTTCAAATCGACAATGCAGAGGATCGAAATGACAATTCAGAGGGTCGAAACGTCAATGCAGAGGGTCGAAACGACAGCACAGTGTACCGGAACTTCAGCTCTGATAATCCCAGGATTAGTATGTCATCCGACAGTGAATTGAGCGATAGTACTCCCGAACAAGAGACAACAAATCGCATACAGCATCACAAAATTATAGCTGCTAAAAGACGGTTAGCTAAAGCGAAACTGATGCACGACCGCATcagagaagaaaaagaaaaagagatAGCAGCACTCGAAGAGCAAAAACAAGCTGAAATAGCTCGGATTATGGCTGAGAAGAATATTTGCGAAGCAGAGATATCCCGCTACCAGGAGAGGTTTACTTCGATGCAGAAAGAGAAAGAAAGAGAGATTGCTCGCCTTAAAACGGAGATGAGAGAAAAGTTGCTAGCAGAGATGGAGGCTGATCGCAGTATGATCGCTGAAGTCGACGGTATGGCGAGGGCCCTTGAAAATGAAAGGGATGCCAAGAGCATGAACCAAGACAACATTGCAAATGAAGATTTAGATCAGCCTGGCACCAGCGGCCAAGGGCCAGCGGAAGCCGGGCTGCTAGTAGATGCACCTGTGTACCACCCTACTTTGGAGGAATTTTCTgaTCCCGTTAAATTCTACGAGAAGATCTGGCCGGAAGCAGTTAGATTTGGTATTTGTAAGATAGTGCCACCTCCTGGTTGGGAGCCGCCACCACATAAACTAGATGAAGATATGAGATTTGATGTTACGAACCAGTTTATTTCGCGACTGCTCAGCCGCTGGGGACCGGCCGCAAGAGAACTTTGTGCTATCAAATTATGTCTCCTGCAACAAAACATTCCAGTTAATCGATTACCAAGTGTGGATGgtgttgaaattaatttaccAAAATTATACCACATGGTGCAACGGCACGGCGGTCTTGAACAAGTTATCAACAGGAAACGATGGGGCAGGGTCGCAGAAGATATGAATTTTACTAGGGGAGCCGGTACTGAGAGGAAATTAGACCAAATCTATGTCAAATATCTCCTCCCATATGACACGCTTTCTCATAAGGAGCGCCACGAAATGATGGCTAAGGTGGAAGCGGCTTGGCGAAAAAAGCATCAAAAGCTTTTTGACCGCGCATTGAACCCGTTATATCGCCAGAAGCTAATGCTTGGCGTTCAGGATGACTCTGAGGAGGAGACAGAAGATCCAGATATGCTGGAAGCTCTCACCGAGTCCGAGGACTGTATTATCAAGGGTTCATCGATGCTcctaaacaaatttaaaaagGTTGCCACCTTTGTGTACGAGGGCGTATTCGGGCAAGGCTCGGAGAGCGCCGCGCCTCCTGACGTCAAAGATATCGAGGAGGGATACTGGCGCCTCGTGACGCATGGCGTCGAGCATACGTGCGTGAACAGCGCGACCATTGACACCGGCGAGGAAGGCTACGGCTGTGTCAAAAATAAGGATTCTTCCAGCAACCACCCATGGCATCCCAAGATGGTTAGCCAGAATCGTCGCAACGTCCTTTCATATTTAGATTCTATAATTGGCTTAACAGTACCCACCCTACTGTTGGGAATGCTCTATGCCACAAGCTGTTGGCACAAGGATCCACATCAAATAGCCTGGATAGAATATCAACTCGTAGGATCACCCAGAATATGGTATGCGATACCAGAACATCAGGCCGGGTCCTTCAGGAGGGCCGTAGAAATTGTTTGCCCAACCTCTGCCCAAAACAAAAGTCTGTGGCTGTCGACGGACATCACGATGATCCCACCGGACCTGCTGCTCCAGCAAAACGTGACGCTGTCGCGCTTGGAACAGAATCCGGGTGAATTCGTCATGGTCTTCCCCAACACCTATACCTCGTGCATCAGCACCGGCTACACGGTTGCCGAAAGCGTTTACTTCGCGCCGCCATCCTGGCTCAAACGGCTGTGGACCGTCTTCAAGGAGACCCGTGAAAGTTGCGAGCCGACAATGTTCGCTATGGAACATCTACTCTACAACATCGCAAGAGACTCAACAGCTGACGAAGAAATAGTGCAGACCGCACAGCCACTATTTGAAAGAATGTTGCATGAAGAAGTGACGAACAGGCAGATGCTGCAAGAGAGGGGTATCTCTTTTGTACAGcagTTGCTGAGCGACGACGCAACACCATCTACTTCAAGCGGGAAGAAGAAAGCTAAACAGTACACCCCGCGCGACCAAGAGGAATGCGAGTACTGCCGGGCCACCTTGTACCTCTCCAAGgtaAGGGGGCTTACCGAACGCAATACTCTATTGTGCCTGGAACATGCTCTAATGTTTTTGGACACAGAGAAGTATAAAGACGTGGACGTTAGCCAGATCCAAGTTCTCGTGCACGTGAGTGTAAAGGAGCTTTACACCGTCAACGACGATATGAAGAGGCGCTTGGGCACAACAAAATAA
Protein Sequence
MLTQPYAAGNKTPMRHNDGGSLSAPPLCQVVGLEKKDKYRKKETDIDGGKRSAYLKLNKLRITECQDARESTTPVKRPKLQTAKKSKEYKRVHAMSLRSRRLSNLELKIIVESGAPLRKVTFKRKRNSSDEDEPLIYQKNKNKKALQTKHSLKRTAARESAPLVGILKHSPPMVEIPDQYVPKVGTAKQSVPKKQSANLVTTPKQNAPKVSTPDHSLSSKKKLRRTSPSEKALKTKPKRKSTPEQSTPEKSPKKKLPQKSIKKEISPIQVTPQKKNSAPAPVIPETLVIVSDKPEDNQTDDWVDSDVSSAVNRDTPDDWVIPYVPDDPLDQDQGGATLPQKDVLPVNDMVAENGALAIDGILATESTLGIEDTRALCGNPGTDGARASDVMLATENELALEDTIVKDHDFAIDRMLVTENETVAKEGIVANKEVAIDGILATESTLDIDDMIGTEDARAFDDTLATRTHNRTQEQDELALKDTIAKECMLAKEGALDVTVAKEGFFAIDGTDATESTFDRDGGAADEAFIPSVQVIPSLNEDEDEDEPFERDIIRLRFEDSSEDETPEIVKVDHFDEHVGDISEFLEGSVKPYDPDVTSDVPLENATQDLLGIRVVSPEPGPSGMQYKFSVYDSESDEKIEYYSNEKLYLGDDIPEQYLQEVFHKTAQNLELERNLQLQKKTCVGASLRSDRDVINASNELLDSCCKVCKPCIRIEKLLKISALISTKIVSRSNRNGRNNNAEDPESDLVETEQDEHEEPLTKADQYEELYLLLPKLSRIMLKIVRNVEHGRQFLAVSFIATSKSLKSDFLLEEKEHILDSLIETLTVGRLTNDSIQGRNDHVQIRFKLPEGRNDNAEARNDNAEARNDNAEARNDNAEVRIDTEVQIDNAEDRNDNSEGRNVNAEGRNDSTVYRNFSSDNPRISMSSDSELSDSTPEQETTNRIQHHKIIAAKRRLAKAKLMHDRIREEKEKEIAALEEQKQAEIARIMAEKNICEAEISRYQERFTSMQKEKEREIARLKTEMREKLLAEMEADRSMIAEVDGMARALENERDAKSMNQDNIANEDLDQPGTSGQGPAEAGLLVDAPVYHPTLEEFSDPVKFYEKIWPEAVRFGICKIVPPPGWEPPPHKLDEDMRFDVTNQFISRLLSRWGPAARELCAIKLCLLQQNIPVNRLPSVDGVEINLPKLYHMVQRHGGLEQVINRKRWGRVAEDMNFTRGAGTERKLDQIYVKYLLPYDTLSHKERHEMMAKVEAAWRKKHQKLFDRALNPLYRQKLMLGVQDDSEEETEDPDMLEALTESEDCIIKGSSMLLNKFKKVATFVYEGVFGQGSESAAPPDVKDIEEGYWRLVTHGVEHTCVNSATIDTGEEGYGCVKNKDSSSNHPWHPKMVSQNRRNVLSYLDSIIGLTVPTLLLGMLYATSCWHKDPHQIAWIEYQLVGSPRIWYAIPEHQAGSFRRAVEIVCPTSAQNKSLWLSTDITMIPPDLLLQQNVTLSRLEQNPGEFVMVFPNTYTSCISTGYTVAESVYFAPPSWLKRLWTVFKETRESCEPTMFAMEHLLYNIARDSTADEEIVQTAQPLFERMLHEEVTNRQMLQERGISFVQQLLSDDATPSTSSGKKKAKQYTPRDQEECEYCRATLYLSKVRGLTERNTLLCLEHALMFLDTEKYKDVDVSQIQVLVHVSVKELYTVNDDMKRRLGTTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-