Basic Information

Insect: Eurema mandarina
Gene Symbol: -
Assembly: GCA_018238005.1
Location: DWAJ01006592.1:1403-4747[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.9 2.5e+02 3.0 2.1 3 20 246 263 244 265 0.93

2 10 0.026 2.3 9.5 1.9 2 23 294 316 293 316 0.96

3 10 1e-05 0.00091 20.2 0.4 1 23 339 361 339 361 0.98

4 10 0.0026 0.22 12.6 0.3 1 23 365 388 365 388 0.97

5 10 0.12 11 7.3 4.0 1 23 393 416 393 416 0.94

6 10 0.039 3.4 8.9 1.6 2 23 423 445 422 445 0.92

7 10 0.0024 0.21 12.7 4.7 1 23 452 475 452 475 0.97

8 10 0.002 0.17 13.0 3.2 2 23 482 503 481 503 0.97

9 10 6.5e-07 5.7e-05 23.9 1.5 1 23 509 531 509 531 0.99

10 10 6.3e-05 0.0055 17.7 0.9 1 23 537 559 537 560 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.9	2.5e+02	3.0	2.1	3	20	246	263	244	265	0.93
2	10	0.026	2.3	9.5	1.9	2	23	294	316	293	316	0.96
3	10	1e-05	0.00091	20.2	0.4	1	23	339	361	339	361	0.98
4	10	0.0026	0.22	12.6	0.3	1	23	365	388	365	388	0.97
5	10	0.12	11	7.3	4.0	1	23	393	416	393	416	0.94
6	10	0.039	3.4	8.9	1.6	2	23	423	445	422	445	0.92
7	10	0.0024	0.21	12.7	4.7	1	23	452	475	452	475	0.97
8	10	0.002	0.17	13.0	3.2	2	23	482	503	481	503	0.97
9	10	6.5e-07	5.7e-05	23.9	1.5	1	23	509	531	509	531	0.99
10	10	6.3e-05	0.0055	17.7	0.9	1	23	537	559	537	560	0.96

Sequence Information

Coding Sequence: atggacACGGGGCTATCGAACACTTATGGAAGATGTAGATTTTGTCACACAGAGGGAAACCATAAGGAAATTATGAAAGAATATGAACGAAATGGTTTACGTGAAATATACTGCGATATTTTTCAAgactgttttaatttatacctGTGTATATTATCTAATCAAAGCAAATTAATATGTTCGTCATGTGTAAAGCAACTGACGGAAGCAAATAGTTTTCGATGTATGGTAATACATGCCGAACAACagttattgaatataaataatcaagaTCCTGTGTTTATAAGTAttccAGGAAACAGCGAGAATGACTGGCCGAAACCTCAAGAGAGAGacaaagatatattaaaagaagaaGTACAGAGTTCAAATGGTGAATTTGATGATGTTTGGAATGAAGACCTATGTGATGACGTCACAAttTCCCCAGCACCAAGTGATATTGAATATGTACGAGGTGAAACTGAATTATTGTCCAGGTTTTCAGATGAAAGTCCAAAGCCATTGCCAACAAGAGATTCATTGTACAAAACATGCCCAacatacattaaacatttGGACTATTTAAATGGAAAAATAATAGGCGCAAGTGCTGTAAAGTTATTGATACACAAGCAAAGAAAAACCTCAAAAGTATACCTAACAGAGAAGAAGGCTATAATCCACAATATAACAATGGTCTTGCAACATTCAAATATGGCGCCATTTAAACCTAAAAGACGTTCAGGAATCATATGTTATTACTGCTGCAAAGGTTTCGACACCTTTGAAAAGTTACACAATCATCAAAGTGAAGAAAATTGCCGGAAAACCTTAGCACAAGTCCTTGCAAAAACTTGTGTTGAAAGCCTAATAATATACACACATGTGActgatttaaaatgtaatatatgcAGTATGATTTGTGACAATTTTAACAGTTTCAAGAACCATCTAATAACAGTGCATCGGAAGAAACTATACACCCAATACAGTGATAGGGTTGTTCCGTTCAAACTAGTGAAAGGAACGGAGTTTCAGTGCCAAATTTGTGGGTTTAGTTTTGAAACCTTTGGATCTATAGAACGACATATGAATGTACATTACAGAAATTATGTTTGTGATCAGTGTGGTGCCGGCTATATGACTAAAAACAGACTTAAAGTGCATTGGAGGTATTCTCATGGCAGTGGTGCGTTTCCGTGTGATTTGTGCAAAAAAGTGTACCCTTCCCAGCATAAATTTAACTGCCATTACAATATAGTGCATCGTTCggttaagaaaaataagtgTACCAAGTGTCCTGCTCGGTTTGctgattattttaacaaacacaagcaTATGGTTGAGGTTCATGGTGAACCACCTTTGGAATATAAGTGTAATGTGTGTGATGCTGTCTTTAGAAGACGGTATGCGTTACACTGCCATGTTAGACGGAGACATTTGGAAGTAAAAGATGTGCAGTGTACGATGTGTTCTTATAAGTGTTATACTAAAACAGAATTGAAGGTGCATATGGTGAAACATATTGGAGAAAGGACGTACCAGTGCGTTGTTTGTAAAAAGTCATACGCTAGGAAGAAAACTTTAAAGGAACATATGAGAATACATGATAATGATAGGAGGTATGTGTGTGCGGTGTGTGGCCAGGGTTTCGTGCAGAATTGTAGCTTGAAAGGGCATATAAGGGCTCATCATGCTAATGTAGCGGATGTGGGGAgggcttaa
Protein Sequence: MDTGLSNTYGRCRFCHTEGNHKEIMKEYERNGLREIYCDIFQDCFNLYLCILSNQSKLICSSCVKQLTEANSFRCMVIHAEQQLLNINNQDPVFISIPGNSENDWPKPQERDKDILKEEVQSSNGEFDDVWNEDLCDDVTISPAPSDIEYVRGETELLSRFSDESPKPLPTRDSLYKTCPTYIKHLDYLNGKIIGASAVKLLIHKQRKTSKVYLTEKKAIIHNITMVLQHSNMAPFKPKRRSGIICYYCCKGFDTFEKLHNHQSEENCRKTLAQVLAKTCVESLIIYTHVTDLKCNICSMICDNFNSFKNHLITVHRKKLYTQYSDRVVPFKLVKGTEFQCQICGFSFETFGSIERHMNVHYRNYVCDQCGAGYMTKNRLKVHWRYSHGSGAFPCDLCKKVYPSQHKFNCHYNIVHRSVKKNKCTKCPARFADYFNKHKHMVEVHGEPPLEYKCNVCDAVFRRRYALHCHVRRRHLEVKDVQCTMCSYKCYTKTELKVHMVKHIGERTYQCVVCKKSYARKKTLKEHMRIHDNDRRYVCAVCGQGFVQNCSLKGHIRAHHANVADVGRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -