Eman014329.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01009910.1:2795-5960[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2 1e+02 4.2 5.1 1 23 131 153 131 153 0.96 2 10 0.076 6.6 8.0 0.1 2 23 160 181 159 181 0.94 3 10 0.00011 0.0097 16.9 1.0 3 23 218 238 218 238 0.98 4 10 0.086 7.5 7.8 0.1 2 23 246 267 245 267 0.94 5 10 0.00073 0.064 14.3 5.2 1 23 273 296 273 296 0.97 6 10 9.1e-05 0.008 17.2 0.2 2 21 303 322 302 323 0.94 7 10 4.3e-05 0.0038 18.2 2.9 1 21 330 350 330 352 0.91 8 10 0.001 0.088 13.9 1.5 1 23 358 380 358 380 0.98 9 10 0.00044 0.038 15.0 4.5 1 23 386 408 386 408 0.97 10 10 3.4e-05 0.003 18.5 1.4 1 23 414 436 414 436 0.98
Sequence Information
- Coding Sequence
- ATGTCAAAAAGTTTAAATGCCTGTCGAATTTGCCTCAGTACCACGTACAAGTCAATTGacgacaataaaaattatttacttatgtttGAATTCTGTACCGGATTGACTattggtGACACACTTCCCCGGTTGTTATGTGAAAAGTGCATTAATGATTTAGaacattatacaaaatttaagaaGAAATGTGCAGAGTCAGAATTGTATTGGGAGTCACTGAGGGCCAGTGAAAAAGTTaaaaataaagataatgaaactatatttaaagacGACTCCAATTCATATGAAGAATttgtagaattaaataaagatcatACTAATAATGATTTGTATAAAGACTGTAATCATGAAGcaATGCTACAATCAAGTGACACAGATACCAATGAAAGCCACAAATGTGGATTGTGTTATTTCACTTGCTCAAGTTTTAATGAGATGAATAACCACTTAGAAAATCATTGGGCTAAAAACAATCTAAAATGTGAAATATGCGATTACGTAGGACGAGATTTTGCTGATATGGTGACccatagGTACAATCATGCAGCGACCAAGACATATTCCTGTTTTATATGCAAATTACAAAAGGGTAGTCTCCTAACATTACAGTACCATTTTAGACATGCTCATTTAAATCAAGTTGGGGGATGGTGTGATATATGTGGGAAAACCTTTAAAGTTTTCAAGTCGTGGAGAACACATATGCTTTACCATAAACGGGATAAGAGACTTTTAATATGTGCTTATTGCGATAAAAGatactTATATAAGTACCAAATTGAAGAACACATAATTTATCATTTGAGGAAAAGTCAGTTTGTTTGTGAAACTTGTGGAAGAGGTTTTAATAAGAAGCACAATTTAAAGtgTCATCAGAGAAATGTGCATAGTGTAAACGTACCTATAAAGTGTGGTCATTGTGATAAAGTGTACAAAAATCAAGGCAGTCTTGACGTGCACTTGAAAGAAGTTACAAGAGACAAACCATACATGTGCGACCATTGTCCCAAAAGTTTTAGCCTACCATCACTGTTAAAAAAGCATTCGTTCTTCCACACGGGACTCAAACCATATGTATGTGATGTCTGTGGCCTAGAGTATAAAACAAGAGGGAGTTTGAAATGCCACCAATTGAAGCATTTAGGCATTTACAAACACAAATGCAGGAAATGCATGCGGTCATTCACAACCTCGGTACAGCTGAGGAGACATCTGACAGTACATACGGGTGACAGgaaatttaaatgtctttACTGTGATAAAAGTTTCAACGAAAAATCGAGGCTTGATAGTCATATCGCAAAACACAAAGATAAAGGCGAAATAAAAACTGAGTCCTAA
- Protein Sequence
- MSKSLNACRICLSTTYKSIDDNKNYLLMFEFCTGLTIGDTLPRLLCEKCINDLEHYTKFKKKCAESELYWESLRASEKVKNKDNETIFKDDSNSYEEFVELNKDHTNNDLYKDCNHEAMLQSSDTDTNESHKCGLCYFTCSSFNEMNNHLENHWAKNNLKCEICDYVGRDFADMVTHRYNHAATKTYSCFICKLQKGSLLTLQYHFRHAHLNQVGGWCDICGKTFKVFKSWRTHMLYHKRDKRLLICAYCDKRYLYKYQIEEHIIYHLRKSQFVCETCGRGFNKKHNLKCHQRNVHSVNVPIKCGHCDKVYKNQGSLDVHLKEVTRDKPYMCDHCPKSFSLPSLLKKHSFFHTGLKPYVCDVCGLEYKTRGSLKCHQLKHLGIYKHKCRKCMRSFTTSVQLRRHLTVHTGDRKFKCLYCDKSFNEKSRLDSHIAKHKDKGEIKTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710514;
- 90% Identity
- -
- 80% Identity
- -