Basic Information

Insect: Eurema mandarina
Gene Symbol: -
Assembly: GCA_018238005.1
Location: DWAJ01001784.1:12179-16380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0096 0.84 10.8 0.5 3 23 28 48 26 48 0.96

2 13 0.00027 0.024 15.7 0.8 1 23 85 108 85 108 0.97

3 13 5.2e-05 0.0046 17.9 2.6 1 23 112 134 112 134 0.95

4 13 0.085 7.4 7.8 0.0 1 23 168 190 168 190 0.97

5 13 0.0025 0.22 12.6 0.6 1 23 244 266 244 266 0.95

6 13 0.00086 0.075 14.1 0.1 1 21 272 292 272 293 0.95

7 13 0.14 12 7.2 0.8 1 23 309 332 309 332 0.95

8 13 0.0024 0.21 12.7 0.5 3 23 339 361 338 362 0.87

9 13 3.3 2.9e+02 2.8 1.3 3 23 369 389 369 389 0.94

10 13 0.0019 0.16 13.1 0.8 1 20 394 413 394 416 0.94

11 13 0.23 20 6.5 4.3 3 23 424 444 422 444 0.94

12 13 4e-06 0.00035 21.5 5.6 1 23 450 472 450 472 0.97

13 13 6.4e-06 0.00056 20.8 0.5 2 23 479 501 478 501 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0096	0.84	10.8	0.5	3	23	28	48	26	48	0.96
2	13	0.00027	0.024	15.7	0.8	1	23	85	108	85	108	0.97
3	13	5.2e-05	0.0046	17.9	2.6	1	23	112	134	112	134	0.95
4	13	0.085	7.4	7.8	0.0	1	23	168	190	168	190	0.97
5	13	0.0025	0.22	12.6	0.6	1	23	244	266	244	266	0.95
6	13	0.00086	0.075	14.1	0.1	1	21	272	292	272	293	0.95
7	13	0.14	12	7.2	0.8	1	23	309	332	309	332	0.95
8	13	0.0024	0.21	12.7	0.5	3	23	339	361	338	362	0.87
9	13	3.3	2.9e+02	2.8	1.3	3	23	369	389	369	389	0.94
10	13	0.0019	0.16	13.1	0.8	1	20	394	413	394	416	0.94
11	13	0.23	20	6.5	4.3	3	23	424	444	422	444	0.94
12	13	4e-06	0.00035	21.5	5.6	1	23	450	472	450	472	0.97
13	13	6.4e-06	0.00056	20.8	0.5	2	23	479	501	478	501	0.96

Sequence Information

Coding Sequence: ATGGCTTTAAGCACACTCAAATCGGATTCAGACCAGAGTATTCTCAAATTGACGACAATAGATTTAGTTGGTGGGATCTTTTGTAACATTTGCAATGAGACATATGGGAATAAGAGAGATTACGATGCTCATTATACAAAACATACCGGAAGTAAGGATATTCTGTATACCTGTGTAGTTTGCCGCAAAGAGGTCGCTGGTTATCCCAGCTTCCGAGGCCATTGCTACACTAATCATGTGATCAAGGGTAGATACAAGTGTAATGATTGTGAAAAATTATTCTCAAAATTACCAGCACTCCAATATCACCTGAAGCAAATGCATTCAAAGAGCTTTCGATGCACCACATGCAAAAAGAAattttcaacaaaaaaggaACTACGGTTGCATGAAGTTATTCATACGGACAGCAATGGCCCCATCACATGCCTGTCATGTCAAAAAGACATCAGCTCAATGGATATTTGCAAAAAACATATTGATTTGCACTCAGCATACATTTACACGTGTCCAATTTGCGAAGAAAACATACCGTCTAAAGAAAATTCTGCAGACCACCTAAGACAGCATTTTGGTTACGGCAGTCTCGATAAAGAGGTTGATTTAGATCCCGATGAAATGATTGAACAACTCGGTGCTGTGTCCTGTATTTTCTGTTCGATGATTTGCAAGAATCGTGTGGAGTTTGATGCTCACTTCTCGTGCGAACATGGTGATGAAGATATTGTGTACAGTTGCATTGTGTGCGGGCGGCAGTTCGATAAATATTCATTGTTCCGGGCTCACATCAAcaaccattttattaataacagatATGAATGTGACATATGCAGAAGCACATTCCCCCGGCTGTCGATGCTAGTATCCCACATGTCAATGTGCCTGCTGGACTCTAAAGCAGGCAAGAAGATGAAGCACAAGCTGTTCGCGTGCCTGCAGTGTAACCACCGTTACATGACCGAGCCGCGGCTGAGGGAACACATGCAGGAAGCACACAATATGCATGTTAGGAAGTGTATGGAGCCGGGCTGTGGAAAAGTTTTCGAGAAACTCAAAGACATGGTAGTGCACCAACGTGAGCATCACTCGCAGATCCAGAACTGGTGTAGGCAATGCGGCCAGCTTTTCACGTCCCTGGTCTCCTGCGAACAGCATCTAGACGTCCACAAGAAAGCTATTTTCGCCTGTCCCGTTTGCAACAAGACCTACGGAGAGAAATATCTGCTCTACAGACATATACCTCACCACTTCGAAACGGTCCTACATCTTTGCAAAGTGTGTGGGAAAGTCTACCACGCTAAGAACAGACTTATAGAACATCTCCATTCGCATTCGGACACAAAAATCCACAGCTGCACCTATTGCCCGAAGTCCTTCACCAAGTCATGGCATCTACAGCAACATTTGAACACCCACACTGGTCTAAAGCCGAACAAATGTGCAATTTGCGATAAATCCTTCTCAAGCTACCCCAACTGGCGCAAACATATGATTAGACTGCACACGGTCAGTTCCAAAAAGTCTATTGAATCTGACGGATCGGACAAACGCAATTCAAAACAAGATCGCCACCCAAAGCTACAGTCTGCTGACgatcaaattaataaagataatgataaaattggaaattcaaaaactaataattggGAGCCCTTCGCGTTCTATGATGATGAATCTGAGATGAGCATGGAATCAGAAAGCATTGATCAGATTGTTATTGATAAAGAATTGCAACTGTTTGGAAGTCAAGAGCAGCatgattttaaaactatgccgAACACTGATCAACATGCCTGTTTACCCGAAGCCATCCCAAACACAGTCCAGTCTGAAGCCCTAGTCCCGTTGGAGTATGGACCAGAGTTTAGTACAACTAACTTGGATGACTACATTCTACCTCACATCGACCCGTTGCTTACTATTCGGAATGATCAGGTCCTACCAATTCAAGACAACCAGCTAACAATCAGAGACGACTTCAAGCCGGACTCCACAATCAGACTAGAACCGATCATAGCTACCAAGTTGGATATTGAGAACAACCTTCACACAAAATGGGAGCCTCCGATGATCACAAAGGTTTTCTCCAACTACTACAGCTACGAGGAGGCAAGCCGTTTGACGATtactgatatattttaa
Protein Sequence: MALSTLKSDSDQSILKLTTIDLVGGIFCNICNETYGNKRDYDAHYTKHTGSKDILYTCVVCRKEVAGYPSFRGHCYTNHVIKGRYKCNDCEKLFSKLPALQYHLKQMHSKSFRCTTCKKKFSTKKELRLHEVIHTDSNGPITCLSCQKDISSMDICKKHIDLHSAYIYTCPICEENIPSKENSADHLRQHFGYGSLDKEVDLDPDEMIEQLGAVSCIFCSMICKNRVEFDAHFSCEHGDEDIVYSCIVCGRQFDKYSLFRAHINNHFINNRYECDICRSTFPRLSMLVSHMSMCLLDSKAGKKMKHKLFACLQCNHRYMTEPRLREHMQEAHNMHVRKCMEPGCGKVFEKLKDMVVHQREHHSQIQNWCRQCGQLFTSLVSCEQHLDVHKKAIFACPVCNKTYGEKYLLYRHIPHHFETVLHLCKVCGKVYHAKNRLIEHLHSHSDTKIHSCTYCPKSFTKSWHLQQHLNTHTGLKPNKCAICDKSFSSYPNWRKHMIRLHTVSSKKSIESDGSDKRNSKQDRHPKLQSADDQINKDNDKIGNSKTNNWEPFAFYDDESEMSMESESIDQIVIDKELQLFGSQEQHDFKTMPNTDQHACLPEAIPNTVQSEALVPLEYGPEFSTTNLDDYILPHIDPLLTIRNDQVLPIQDNQLTIRDDFKPDSTIRLEPIIATKLDIENNLHTKWEPPMITKVFSNYYSYEEASRLTITDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00710474;
90% Identity: iTF_00710474;
80% Identity: -