Basic Information

Insect: Eurema mandarina
Gene Symbol: -
Assembly: GCA_018238005.1
Location: DWAJ01000116.1:15372-16635[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.7e-06 0.00015 22.6 2.0 1 23 167 189 167 189 0.97

2 8 8.5e-05 0.0075 17.3 3.4 3 23 197 217 195 217 0.96

3 8 3.4e-05 0.003 18.5 2.6 1 23 223 246 223 246 0.97

4 8 2e-05 0.0017 19.3 1.2 1 23 253 275 253 275 0.96

5 8 2.4e-06 0.00021 22.2 0.2 1 23 281 303 281 303 0.96

6 8 0.00026 0.023 15.7 4.7 1 23 312 337 312 337 0.94

7 8 1.4e-05 0.0012 19.8 1.3 1 23 343 365 343 365 0.95

8 8 9.3e-05 0.0082 17.2 1.2 3 23 373 393 372 393 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.7e-06	0.00015	22.6	2.0	1	23	167	189	167	189	0.97
2	8	8.5e-05	0.0075	17.3	3.4	3	23	197	217	195	217	0.96
3	8	3.4e-05	0.003	18.5	2.6	1	23	223	246	223	246	0.97
4	8	2e-05	0.0017	19.3	1.2	1	23	253	275	253	275	0.96
5	8	2.4e-06	0.00021	22.2	0.2	1	23	281	303	281	303	0.96
6	8	0.00026	0.023	15.7	4.7	1	23	312	337	312	337	0.94
7	8	1.4e-05	0.0012	19.8	1.3	1	23	343	365	343	365	0.95
8	8	9.3e-05	0.0082	17.2	1.2	3	23	373	393	372	393	0.98

Sequence Information

Coding Sequence: ATGGAATTTTCGCCTCTTCTTGTTCCTAATATGTGTCGAACTTGCTTAGTAGAATTTGATTCTGGGGAAACGGCCATGTTTATGAATGTACAAGATCTCATTGaacatgaaattaataaaattaaattgatagaCATATTAGTTTTCTTAAATTGCTTAGAGCATAATGATGAAGAAAACTGGCCTCAAGGAATTTGCACATCGTGTGTTTCGACAGCTTTAATGGCTTATAGTTTTAAgcttaattgtttaaaagctAATGCAACACTCTCACAAATACTCTCTCTGCAACAACAAACTTCCCAACAGTCTGATATAGACAATATTGACATAAATGTTGTTTATCAGGACCATGAGTATGAAGTACCCCTTTTCAGTAGTCAATCAGTGTTGGATTTTGATTCTAATTTACCTTCAAGTAAGGAAATCACCCCTCTTCCACCTGTTACTGAAATAACATCCACAGAGCATCCACCAAGAAAGGAAGGAGAGAAAAAGTATTCTTGTTCCATTTGTAACAAATCATTTACCCGTATATACAGTCTTAGATACCATATGGGAAAACACAGTAAATTTCCTAGACATTTATGCTCTAAGTGtggaaaaagtttttttacttataatggACTAAGTCAACATCTCAGATCACATAGAGACCTGGCTCAGTTCAAATGtggattttgtaataaaacgtATAAATCAAGACAATCCTTAAAAGAACATTTCAGAGTGGCACACTCAAGTAATTGTAAGCTATTTGCTTGTGTTTCATGTGATAAGAAATTTACAGCAAAATCAACTTTGAATATGCACATGAAAAGTCATACTGGATTGAAAGAATTTGCATGTACAATGTGTCCAAAGTCATATACAAGGGCATCTTATTTAAGAGCTCATGCTCTAATTCATACTGGACAAGAAAGACCAAAACCTTTTCAATGCCAGTACTATGAATGCAATAAAAAGTTCTCAACTAAGCATTCACTTTTGGTACATATAGCTCATACACATAGCATTGAAAGGCCTCATAAATGTGATATTTGTTCTAAAGGTTTTGCAACCAAGTCTGGTTTAAAAAGTCATAGAGATGGCCATACTGCCAGCAAAGAAGTAGCTTGTGATATTTGTAGTAAAAAGCTGTCAAATAAGAGGGTGTTGCAAAAGCATATGAAGATGCATGAGGTTAATCAGTGA
Protein Sequence: MEFSPLLVPNMCRTCLVEFDSGETAMFMNVQDLIEHEINKIKLIDILVFLNCLEHNDEENWPQGICTSCVSTALMAYSFKLNCLKANATLSQILSLQQQTSQQSDIDNIDINVVYQDHEYEVPLFSSQSVLDFDSNLPSSKEITPLPPVTEITSTEHPPRKEGEKKYSCSICNKSFTRIYSLRYHMGKHSKFPRHLCSKCGKSFFTYNGLSQHLRSHRDLAQFKCGFCNKTYKSRQSLKEHFRVAHSSNCKLFACVSCDKKFTAKSTLNMHMKSHTGLKEFACTMCPKSYTRASYLRAHALIHTGQERPKPFQCQYYECNKKFSTKHSLLVHIAHTHSIERPHKCDICSKGFATKSGLKSHRDGHTASKEVACDICSKKLSNKRVLQKHMKMHEVNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00710432;
90% Identity: iTF_00710432;
80% Identity: -