Eman004207.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01001665.1:7886-10204[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 99 4.3 0.4 3 23 19 40 19 40 0.89 2 15 0.00091 0.08 14.0 2.1 1 23 62 84 62 84 0.98 3 15 0.0009 0.079 14.1 0.1 1 23 88 110 88 110 0.95 4 15 0.0045 0.39 11.9 0.1 1 23 115 138 115 138 0.95 5 15 0.0007 0.061 14.4 3.4 1 23 144 167 144 167 0.93 6 15 0.013 1.1 10.4 0.7 1 13 174 186 174 188 0.90 7 15 0.019 1.7 9.9 1.0 1 23 306 329 306 329 0.96 8 15 8.4 7.4e+02 1.6 0.4 2 23 354 376 353 376 0.89 9 15 0.00041 0.036 15.1 0.1 1 23 400 422 400 422 0.98 10 15 0.00021 0.018 16.0 0.2 1 23 426 448 426 448 0.98 11 15 0.00045 0.039 15.0 0.5 1 23 453 476 453 476 0.96 12 15 0.0027 0.24 12.5 0.1 2 23 483 505 483 505 0.93 13 15 0.017 1.5 10.0 6.3 1 23 512 535 512 535 0.96 14 15 1.5e-05 0.0013 19.7 3.4 1 23 541 563 541 563 0.98 15 15 0.00044 0.038 15.0 2.5 1 23 569 591 569 591 0.98
Sequence Information
- Coding Sequence
- ATGTCTAAACTAAAACGACACGGGTTAGTCAAAGTAGATATTACTGACGTCGGTTGCAAATTATGCGATGATCAATTAACCGATTTGAATTCTTTAAGACGCCATCTTGTAGCAACtcacaataaaaatctaaatgttaatataacaGATGATGTCTTACCGTTCAAAGTTACTAAAGATACGTTTAAATGCGTGTTGTGTGAAGAGAAATTCGACGAATATAAAACTCTGAACCATCACATGAATGTCCACTATCAGAATTTTATATGCGAGCAATGCGGCACTGGTTTCATTACTCCCGAGAGACTTCGATCTCACGCGTTTTCTCATGAAACCGGAGCCTTTCCTTGCGAAGGCTGTGATAAGGTTTATAGGTCAATGAACGCGAAAAACGAACACTACGCCACTGTTCATAAGCAAGTCAAGAGGCATAGGTGCCCGCACTGCCCAGAGACTTTCAGGAATTActttcaaagaaacaaacatatttcagCCATCCATGGGCTCAAATTGAAAGAGTTCAAGTGTACGCTATGTCCAAAAGTCTTTACGTCCAGTGGAACTGATTCGGGAAAATTGACCACGGATAGACAAGTGACTGCAAAAAGAGTAACGCCTCTCTTTCAAGTGGCGTACGATTGGCGACTTTGCAAACCGTTGGGGACGATCACGGACTTCAGCAAATTTCGTCCGAAAAGCTCCACGATCAATATTTCTTTACCTGAAAACGACTATGCTGCCTCCCGCAGTCCGTCACCTATTTCCATGGACAGGAATAGCCCTGATATCGCAGTTCGCAAAGTTCCGATAGAACAGTCGCCgcgaatatataaaaaacaggcAGATTTTAGACAGAACGCTTTAACTGTATTCGAATTCTCGACAGCGTATCCATTTATTTATGGaaacaataaattcaaatgtttCATCTGCTCCCAACCCTTTCTAGAAACGTCCTTATTGAGACAGCATATGAAGGATTCACACACTTTCGCGCCTCTAAagagattattaaataacagaagagaaaacgttttaaaagtGGACGTGAGTGAATTATCGTGTAAATTGTGCTCTGAAAAACCGAAGGACTTGATGCAAATGAAGCTTCACTTAAAAGAAGTCCATGAAAAGGCCATTGACCCCGACCTGCAGGACAACATTATTCCGTTTAAACTCGATTTTATAGACGAGTCCTACAAATGCGTTATATGTGAGCAAAGTTTTGTTAAAGTACGCCTACTCGTTATTCATATGAGCGtgcattttaataactatagcTGTGAGATTTGTGGATCAGGGTTCATGACCCTGCGTCTATTAAAGAAACATCTGGAAGTCCACGAGACTGGAAATTTTCCATGTGACCGTTGCACTAAGGTTTTCAGTACGTCGTATAAAAGGGCGTTGCATATTCGCGGCGTGCATCTGAAGCAGTATCCGAGGAGGTGTCCTATATGCCCAGAGAGGTTTAACTCAAACTATGGGAGAACGATTCATCTCCAAGATGTGCATAACCAAAACACAAGGGTccataaatgtgaaacttgTGGGCGGGCGTTCAATTTAAAGTATCATCTGATCTGTCACACACGTTCTGTGCATTTACAAGAGAGGAACCATCAGTGTAAGATGTGTTTGCAGCGGTTCAGTAATAAGGAAACTCTGAAGAGGCACATGATTATTCACACTGGGGAGAAAAATCATAAATGTGATTTCTGTGGTCTCGCGTTTTTGAGGCGGAAAAATTTGAAGGATCATCTGAGGTTGCATGATGTTGTCTAA
- Protein Sequence
- MSKLKRHGLVKVDITDVGCKLCDDQLTDLNSLRRHLVATHNKNLNVNITDDVLPFKVTKDTFKCVLCEEKFDEYKTLNHHMNVHYQNFICEQCGTGFITPERLRSHAFSHETGAFPCEGCDKVYRSMNAKNEHYATVHKQVKRHRCPHCPETFRNYFQRNKHISAIHGLKLKEFKCTLCPKVFTSSGTDSGKLTTDRQVTAKRVTPLFQVAYDWRLCKPLGTITDFSKFRPKSSTINISLPENDYAASRSPSPISMDRNSPDIAVRKVPIEQSPRIYKKQADFRQNALTVFEFSTAYPFIYGNNKFKCFICSQPFLETSLLRQHMKDSHTFAPLKRLLNNRRENVLKVDVSELSCKLCSEKPKDLMQMKLHLKEVHEKAIDPDLQDNIIPFKLDFIDESYKCVICEQSFVKVRLLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCTKVFSTSYKRALHIRGVHLKQYPRRCPICPERFNSNYGRTIHLQDVHNQNTRVHKCETCGRAFNLKYHLICHTRSVHLQERNHQCKMCLQRFSNKETLKRHMIIHTGEKNHKCDFCGLAFLRRKNLKDHLRLHDVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -