Eman007260.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_018238005.1
- Location
- DWAJ01003473.1:8746-13281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0068 0.6 11.3 0.7 1 20 43 62 43 64 0.93 2 13 0.00017 0.015 16.3 4.2 3 23 107 128 105 128 0.94 3 13 0.23 20 6.5 2.8 2 23 136 158 135 158 0.96 4 13 6.7e-06 0.00059 20.7 0.6 1 21 163 183 163 184 0.94 5 13 1.6e-06 0.00014 22.7 0.3 1 23 195 218 195 218 0.97 6 13 0.046 4 8.7 3.2 1 23 223 246 223 246 0.92 7 13 1.7e-05 0.0015 19.5 0.2 1 23 253 275 253 275 0.98 8 13 0.055 4.8 8.4 0.2 1 23 280 302 280 302 0.96 9 13 1.3e-05 0.0011 19.8 0.4 1 23 308 330 308 330 0.98 10 13 0.0011 0.097 13.8 0.2 1 23 333 356 333 356 0.92 11 13 0.00051 0.045 14.8 0.3 2 23 364 387 364 387 0.96 12 13 1.1e-05 0.00099 20.0 0.6 1 23 391 413 391 413 0.98 13 13 0.56 49 5.3 4.2 3 23 421 443 420 444 0.87
Sequence Information
- Coding Sequence
- atgcCGCCTAAACGAGGTAGAGGACGACCGCGACGAAATTTAGCGGAATCTTCTGATTCGAATCAAAAGCTACCATTAGAGATAAACGTTgacacaattaaaaatattagcaaCGAAGTAGGAGAGTATATTTGCTCGTCATgtgaaaaatcttttaaaagtgttattgCTTTAAAACAACATGCGTGCTCGAGCAGTGGCGAAGATTCCGGCTTACGTATTGATGATGGACAGGAAAACGTAGCAGATGAAGGCCATCCCTCAGTGAAACGTCGATCATGGATTCGAAGAACGAAGCAGGGACGGCCCCTGATGCACTGTACGAAATGTGATAAagtattcaaatttcaaaagagctttattaaacatatgaCTAACGAACACTCGGAAACTCCCAATAGTGTGAGTTGTGATCAATGCCATGTTACTTGCcctaataaagaaattttactaaagcatattaataaaaagcattGTACAGATTTATATGCTTGCGAGTATTGTGGAAAAAAGTTTGTTCGTAAAGCTCATGTCACAAGACATTTACTACAGAAGGGATGTGATGGAAGAAATTTAGCCACCTTCACCTGTGGTataTGTCCTGCAAAATTTACCCGTAAGGATAATTTAATGGTGCACTTAAGACTCCAACATATTTCTAAATCATTCCTTTGCAAGCAGTGTGAATATTGTACAAGAAATTTTTCTAAACTCATTATACACACCCAAAATGTTCATTATCcaaaGCCATTAAGATTTGAATGTGACTACTGTGGGAAAGTAACAAGTACTAGAGCCTCTATCACCAAGCACCTAGAAATCCAtggagaaaaaaaatatgcttgTGGAGCCTGTGGCTATAGGACATACACCATAGAGGTTATGCGTCGCCATATGCTTACGCACGTTCAGGACAAGCCGTACAAGTGCAATATTTGCGACAACTCCTACATACAGCGTGCACAACTCGTACGACATCTCGAGAAGCATGTAGGCTTCACTTGCAAAATATGCGATCAAAGATTTGATACGAGGGAATTATATGGCGCCCATGTCTTGGAAGCTCATAAAGGAACTACCAACCTTCGTAAATGCACATTTGAAGACTGCAACGAGATATTCAAAAGCGAAGTGGAGTTAGAGAATCACATAAAGCAGCATTTAAatgCGTACAGATGCGGGCTGTGCAACAAGCCGTTCAAGAACGAGATGAACATGCGGCGGCACGTGGCGACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGTGTGTGCGCGCGCGCCTACGTGCGCGGCGAGCACCTGCTGCGCCACGTGCGCAAGCACCACGCCGACGTGTTCCGTCAGCGCCTGCTGCACGTGCGCAAAGTGCTGGGTTCATACGAGACAACGACCCGCGTGAGGAAGTCAGAGTTGGAGGCGATCCTAAATGCACTAGATGTGGAGTCGGACCGCATCATCGAGGACTACGGGCCAGGCGTGTTGTACGGAGGCCTGCAGGAGGCTAACGAAGACGAGATGGTTGTCGAATCCAAGATTAagtCAGAACCAAGTCCTTTACTGAGCGAAGTAGAACTCGCAGATAATCTTAAACAACTTCTCGCAAAATTAATTGATACTGAGTTGCTGGAAGCATTCGGATGGCCAGATGACGACATTGATGAGATATTGGAGAGAGTTGTGGAAAACTGCGGCGCCCGCGCAGCCGACCGCACCAAATGGGGTCGAGTGCAGAGACTACGAGAAAACGCCAAACAATTGTTCTTGCATGCCATTGAAGACAAGAATATCGCCAAGATGCTCAACACACACACGATTGACCAAGTGATCAAACATATCTTGGATCATGTTAGTGACGATTCATAA
- Protein Sequence
- MPPKRGRGRPRRNLAESSDSNQKLPLEINVDTIKNISNEVGEYICSSCEKSFKSVIALKQHACSSSGEDSGLRIDDGQENVADEGHPSVKRRSWIRRTKQGRPLMHCTKCDKVFKFQKSFIKHMTNEHSETPNSVSCDQCHVTCPNKEILLKHINKKHCTDLYACEYCGKKFVRKAHVTRHLLQKGCDGRNLATFTCGICPAKFTRKDNLMVHLRLQHISKSFLCKQCEYCTRNFSKLIIHTQNVHYPKPLRFECDYCGKVTSTRASITKHLEIHGEKKYACGACGYRTYTIEVMRRHMLTHVQDKPYKCNICDNSYIQRAQLVRHLEKHVGFTCKICDQRFDTRELYGAHVLEAHKGTTNLRKCTFEDCNEIFKSEVELENHIKQHLNAYRCGLCNKPFKNEMNMRRHVATHTLDRPRRCMYCVCARAYVRGEHLLRHVRKHHADVFRQRLLHVRKVLGSYETTTRVRKSELEAILNALDVESDRIIEDYGPGVLYGGLQEANEDEMVVESKIKSEPSPLLSEVELADNLKQLLAKLIDTELLEAFGWPDDDIDEILERVVENCGARAADRTKWGRVQRLRENAKQLFLHAIEDKNIAKMLNTHTIDQVIKHILDHVSDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710409;
- 90% Identity
- iTF_00710409;
- 80% Identity
- -