Eman009639.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01005262.1:1-3760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00021 0.019 16.0 0.9 1 23 62 85 62 85 0.95 2 19 0.018 1.6 10.0 0.1 2 23 111 133 110 133 0.93 3 19 0.069 6 8.1 3.2 3 23 158 178 156 178 0.95 4 19 0.00021 0.018 16.0 0.4 1 23 182 204 182 204 0.97 5 19 0.0016 0.14 13.2 0.3 1 23 211 234 211 234 0.98 6 19 0.0027 0.23 12.6 1.4 2 23 242 264 241 264 0.94 7 19 5.1e-07 4.5e-05 24.3 0.9 2 23 270 292 269 292 0.97 8 19 0.91 79 4.6 1.1 1 23 298 321 298 321 0.86 9 19 0.00014 0.013 16.6 2.4 1 23 327 350 327 350 0.98 10 19 0.9 79 4.6 1.5 1 23 426 449 426 449 0.91 11 19 0.36 31 5.9 0.0 2 23 475 497 474 497 0.95 12 19 0.0014 0.13 13.4 0.1 2 23 520 541 519 541 0.96 13 19 0.00018 0.016 16.2 1.2 1 21 545 565 545 567 0.94 14 19 0.00055 0.048 14.7 1.4 1 23 572 595 572 595 0.97 15 19 1.1 97 4.3 1.8 2 23 603 625 603 625 0.89 16 19 2.1e-05 0.0019 19.2 0.8 3 23 634 655 632 655 0.95 17 19 0.0035 0.3 12.2 3.8 1 23 661 683 661 683 0.97 18 19 1.8e-05 0.0016 19.4 1.6 1 23 689 711 689 711 0.98 19 19 0.00021 0.019 16.0 6.2 1 23 717 740 717 740 0.98
Sequence Information
- Coding Sequence
- CGTACTGGAGGCAGGAAAAAACGGAAGTTAAAAGAAGATATCGAAACGGAAGCCACAGAAGACGTACACGATATAGTATACCGCGAAAAGCATCTAACCGAGATGCAGAAACAATGGCACAATCTTAACATTTTGCTCACGAATTCAAATATTACCCCCTTCAAAGATCGCAACGACGCTGGTTATATATGCGCGTACTGTTTCAAAACTTTCCCAGACGCCAACGAGCTAAGAACTCATACCCACATTGATCACGATAAAGAAAAACCTTCCTACAAAGCTGGGACTGGAATGAGCAGCTTCGTAGCGTGCTTTGATATCGTCGATCTTAAATGCACACTCTGCAATAGACCATTTGAAGCTATAGGTGATCTAACCAACCATTTAGTTAGTGAACACGATAAGAAGTACTACCTAGACGTTACTGATTATTTCCAACCCTTCAAACTGACCAATGAACCACAAATAAACTGCTGTCTATGCAATGAGATCTTCCACAATATGAAGCTGCTGATGCAGCATATGAACGAGCACTACAGGAATTTTATATGCACGATATGTGGGGCAGGGTTCGTGAACAGCTTTAGACTGAAACGTCATGAGACCACGCATATTAAAAAGAGCAATAGTTATCCCTGTCGACATTGTGGTCTGGTCTTCCCGGCTGAGTCGAAGAAGAAGGCTCATATTAACACAGAGCATAAAGGAATAGCTGGTGATAGTGTCTGTCAGATTTGCAAAGCCAGGTTTAAGAATTACTACCAGAAAACACGTCACATGTCCCAAGTACATAACGTCGAAGGAATCAAATGCGATATGTGTGATAAGAAGTTCAGTCTGAAGTCCAATTTGATGTTGCATATGCGAAGTGTACATTTAAAGGAGCGTCCATATGCCTGCTCAGTGTGCAGTATGAGTTTCTTCATCAAGCGTCACATGCTGGGACATTATTTAGCAACGCACACGAACGAGAGGAAATTTAAGTGTGACGTGTGCAGCAAAGCGTACGCCACGCAGAATAGCAAACGGAAACATATGAAGAAGAACCACGGAATCAGTAAAGCGACGAgTATACTCCAAAGCACTGGCACAAGATCCTCAGGTAATTCTAAGAGAAAAATTATAGCAGAAACGATTAAAATAGTTTGGAAGAACAGTTTTACCGAGGAAGTGCCAGAGCTAAAAGATAAGGAGATCAAAAAGCATCGTCATAACATTAGACAGATGTTGGAGTGTACGAACGCTACGCCGATTCGGTGTCACGGTGGTAGAGGCTACGCGTGTTGCTTTTGCGAAGACCAGTATGAAGACCCGAAAGACCTTAAAAAACACACTCTCGACCAACACAGTTCGAACACAAAAGACTTTATGAAAACGGCCATCATGTCCAAGTATATTGTTAAACTCGACATAACGGGACTAAAGTGTAATCTCTGCGAAGAAAGTCCTCCAAATATCGATCAACTAACGACCCATCTAATCAAAGCTCACGACATCAAATTCTTTACAGATATCAAAAGCCATGTGGTTCCTTTCAAGTTTGAGACAGAATCTCTCACCTGTGCGATATGTCCGCAAATTTTTAACAGATTCAAAGGTCTTTTAGAACATATGAGTATCCACTTTCGGAATTATACGTGTGATATTTGCGATGCGGGATTCGTGAACAGGTCGACGCTCAAAAACCACGTCAACTGCCACGAAAACGGCTCCTATCAATGCGAAGTTTGTTCTAAAACCTTTGCTTCGTACCGCAAAATGAAAATGCACGAGAAATCGGTACACGTGTACTCGAACAGGTTAAACAGATGCGGCTATTGTAAGGAGCTCTTCAAGTCGCACAGGATGAAGGAGAAGCATTTGGTGGAGGTACATGGAGTAAAGACTGCTACGATTAACTGTCAGGCGTGCGACAAGACATTTGAGACGCAAAGCCAGCTACGAGTTCACACGAAAAGGGATCATTTGTGCGAGCGCCGTTTCGTCTGCAACCATTGTGATATGAGGTTCTTTTTGAACCACGAATTGCAGGATCATCTTGTGAAGCATACGGGTGTTAGGACGTTCGAATGTGTGGTGTGCCACAAGGCGTACGGTAGGAGAAAAACGCTTAGGGAACATATGCGTATACACGATGATGATAGACGGTTTAAATGTGAACATTGCAGCCAAGCCTTTGTCCAGAAATGCAGCTGGCGTAGTCATATGCGAACGAAACACGGCGAGGACGTTTGA
- Protein Sequence
- RTGGRKKRKLKEDIETEATEDVHDIVYREKHLTEMQKQWHNLNILLTNSNITPFKDRNDAGYICAYCFKTFPDANELRTHTHIDHDKEKPSYKAGTGMSSFVACFDIVDLKCTLCNRPFEAIGDLTNHLVSEHDKKYYLDVTDYFQPFKLTNEPQINCCLCNEIFHNMKLLMQHMNEHYRNFICTICGAGFVNSFRLKRHETTHIKKSNSYPCRHCGLVFPAESKKKAHINTEHKGIAGDSVCQICKARFKNYYQKTRHMSQVHNVEGIKCDMCDKKFSLKSNLMLHMRSVHLKERPYACSVCSMSFFIKRHMLGHYLATHTNERKFKCDVCSKAYATQNSKRKHMKKNHGISKATSILQSTGTRSSGNSKRKIIAETIKIVWKNSFTEEVPELKDKEIKKHRHNIRQMLECTNATPIRCHGGRGYACCFCEDQYEDPKDLKKHTLDQHSSNTKDFMKTAIMSKYIVKLDITGLKCNLCEESPPNIDQLTTHLIKAHDIKFFTDIKSHVVPFKFETESLTCAICPQIFNRFKGLLEHMSIHFRNYTCDICDAGFVNRSTLKNHVNCHENGSYQCEVCSKTFASYRKMKMHEKSVHVYSNRLNRCGYCKELFKSHRMKEKHLVEVHGVKTATINCQACDKTFETQSQLRVHTKRDHLCERRFVCNHCDMRFFLNHELQDHLVKHTGVRTFECVVCHKAYGRRKTLREHMRIHDDDRRFKCEHCSQAFVQKCSWRSHMRTKHGEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -