Eman012057.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01007478.1:2344-4495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.41 36 5.7 0.1 3 17 62 76 60 77 0.92 2 14 0.01 0.88 10.8 1.0 1 23 115 137 115 137 0.95 3 14 0.97 85 4.5 0.1 5 20 213 228 212 230 0.92 4 14 0.021 1.8 9.8 0.0 2 23 249 270 248 270 0.97 5 14 2e-05 0.0017 19.3 1.9 1 23 286 308 286 308 0.99 6 14 0.001 0.089 13.9 3.0 1 23 316 339 316 339 0.95 7 14 0.015 1.3 10.2 1.8 1 23 345 367 345 367 0.94 8 14 2.3e-06 0.0002 22.2 3.0 1 23 373 395 373 395 0.98 9 14 3.2e-07 2.8e-05 24.9 1.0 1 23 401 423 401 423 0.96 10 14 5.1e-07 4.4e-05 24.3 0.6 1 23 429 451 429 451 0.99 11 14 2.6e-07 2.3e-05 25.2 0.6 1 23 457 479 457 479 0.98 12 14 0.00013 0.011 16.7 1.0 1 23 485 507 485 507 0.98 13 14 0.00046 0.041 15.0 2.4 1 21 513 533 513 535 0.95 14 14 6.8e-07 5.9e-05 23.9 0.2 1 23 541 563 541 563 0.98
Sequence Information
- Coding Sequence
- atggataTTGTGACAAAAATATTAGCATATCCAGAAAAAGTGTGTAGGATTTGTCACTGTGAAGACCTCAATCTAATATCACTACAACACAAAATAGACAACGATAGTCGTAATCTTTGTGAAATTCTTTCATgtttaactaatttaaatataaatttaatcgaTGAATACCCAAAACAAATAtgcaataattgttttaaggcATTAACTGACGCTGACCACTTAAAACAGCGTAGCATTCTCtcagaaaacattttaaaagaagcCCTTAATATAAAGTTGCGAAAAAACTCCCATAGTGACTCGAAACATggaattactctatctgagCCACCTGAACTATATCAGTGTGCTGTGTGCTTTAAGAAATACTcgaatttaattgatttagaATACCATTCGTTTAGTCATAGCATTGATAAAAATGATGATACCAAATTATATGGAACTGATACAAAACATGCTACAGAAGTGCCGATAGTGAATGAAGAAAGcctaaatattgttatagtatCTAAGACTGAAGTTAATTGTGTTAAAGAGGAAGAGACTATCAAAAATGAATATGAGGCCAATGAATTTGATTGTGATATGTCCCAAAGTAGTGATAATCAAGATAATTTTGAAGCTATTTGCGATTGTAGCATGTCTTTTAATTCACAGATAGAATACAGTAATCACATAGATGTATGTgacaaaaaagaaacaaaacccAATAGTTCTAATGGGGTTTCTATTAAGGTTGTTTGTCCTAAATGCAGTATAGCATTACCAAGTTTAGAAGCATTAACATTGCATATAGAGAAACACAAAGGTGATACAAAATCTTCGAAGCCTGCAAAGCCcttaaaaccatttaaatgTGATCAGTGTATGCGTAAGTTTACGAATGAGTCTTCGTTACAAGCCCATATTAAGAAACACGATGAGAATTCACAGCAAAAGTTTATCTGTAAAAGTTGTAAACGCGAATTCCAACACCAAGCTCATTTGGAGAACCATATCTTGCAAGTACATACAAGAGATAGGGGTTTTAGTTGTGACTGTTGTGAAAAGAATTTCACGACTTTGGAAGCTTTACGTGTGCATAAGGAGCTTCATAAAGTCGAAAAGAAACATCAGTGTAAGATTTGTAAGAAGTCATTCATCATGTTGTCGTCTTTGACAGATCATTTACGAACACATACTGGTGAGAAACCATACTTATGTTCGACATGTGGACGAGGGTTTTCACAGAAAACAAATTTGGAGCAGCATATTCGAAGACATCTTGGGTTGAAACCGTTTCAATGTGAAAATTGTGATAAGAGGTTCGTATCCAAAGGCGAGCTAGTCGCCCACACTCGAAAACACAGCGGTGCACATCCTTTCGTCTGTGACGACTGCGGCAACGGATTCACAACATCAAGTTCCCTAGTAAAGCACAGACGGACGCACACAGGCGAGAGACCATTCTCCTGCGACATGTGTTCTATGAAATTCGCAGCATCAGGCACTTTGAAGAACCATAGACGGACACATACAGGAGAAAAACCTTACCAATGCTCGTTCTGTGAAAAGGCCTTTGTACAGAAACAAGATTTAGTGTCACATGTACGGTGTCATACGGGAGAGAGGCCGTATGTGTGTAATAATTGTGGTCAAGCTTTCCGGAAGGCTTCGGCTTTGAAAGTGCATTTGAAGATACACGGTAAAGAGAGGGACTTGTTGCAAGGGATTAATGTGCAGGTGTGA
- Protein Sequence
- MDIVTKILAYPEKVCRICHCEDLNLISLQHKIDNDSRNLCEILSCLTNLNINLIDEYPKQICNNCFKALTDADHLKQRSILSENILKEALNIKLRKNSHSDSKHGITLSEPPELYQCAVCFKKYSNLIDLEYHSFSHSIDKNDDTKLYGTDTKHATEVPIVNEESLNIVIVSKTEVNCVKEEETIKNEYEANEFDCDMSQSSDNQDNFEAICDCSMSFNSQIEYSNHIDVCDKKETKPNSSNGVSIKVVCPKCSIALPSLEALTLHIEKHKGDTKSSKPAKPLKPFKCDQCMRKFTNESSLQAHIKKHDENSQQKFICKSCKREFQHQAHLENHILQVHTRDRGFSCDCCEKNFTTLEALRVHKELHKVEKKHQCKICKKSFIMLSSLTDHLRTHTGEKPYLCSTCGRGFSQKTNLEQHIRRHLGLKPFQCENCDKRFVSKGELVAHTRKHSGAHPFVCDDCGNGFTTSSSLVKHRRTHTGERPFSCDMCSMKFAASGTLKNHRRTHTGEKPYQCSFCEKAFVQKQDLVSHVRCHTGERPYVCNNCGQAFRKASALKVHLKIHGKERDLLQGINVQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710404;
- 90% Identity
- iTF_00710404;
- 80% Identity
- -