Eman004204.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01001665.1:1-4984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.03 2.6 9.3 0.4 1 20 54 73 54 75 0.95 2 28 1.8 1.6e+02 3.6 0.5 3 23 148 168 148 168 0.96 3 28 0.00019 0.017 16.2 0.2 1 23 172 194 172 194 0.96 4 28 0.41 36 5.7 0.3 1 14 199 212 199 222 0.79 5 28 0.0017 0.15 13.2 1.0 1 23 228 251 228 251 0.96 6 28 0.00023 0.02 15.9 1.9 1 23 258 281 258 281 0.96 7 28 1.5e-05 0.0013 19.7 3.0 1 23 288 310 288 310 0.97 8 28 0.64 56 5.1 0.5 1 10 316 325 316 328 0.94 9 28 0.0068 0.6 11.3 1.5 1 23 401 423 401 424 0.95 10 28 2.8 2.4e+02 3.1 0.1 2 23 451 473 450 473 0.92 11 28 0.0015 0.13 13.4 0.6 1 23 495 517 495 517 0.99 12 28 2.5e-05 0.0022 19.0 0.9 1 23 521 543 521 543 0.98 13 28 0.1 9 7.6 0.6 1 20 577 596 577 600 0.83 14 28 0.0044 0.38 11.9 0.4 1 21 606 626 606 627 0.94 15 28 1.4 1.2e+02 4.0 0.7 3 23 675 695 674 695 0.95 16 28 0.0023 0.2 12.8 0.8 3 23 721 742 719 742 0.94 17 28 0.00057 0.05 14.7 7.4 2 23 790 811 789 811 0.96 18 28 0.0023 0.2 12.7 0.2 1 23 816 839 816 839 0.94 19 28 0.0052 0.46 11.6 3.4 2 23 846 868 846 868 0.95 20 28 0.039 3.4 8.9 0.1 3 23 974 995 972 995 0.92 21 28 0.019 1.7 9.9 1.7 2 23 1018 1039 1017 1039 0.96 22 28 0.0092 0.8 10.9 4.6 3 23 1045 1065 1044 1065 0.97 23 28 0.59 51 5.2 1.7 2 20 1071 1089 1070 1093 0.84 24 28 2.1e-05 0.0018 19.2 1.5 1 23 1099 1122 1099 1122 0.98 25 28 0.082 7.2 7.9 1.0 1 23 1128 1151 1128 1151 0.96 26 28 0.00022 0.02 15.9 0.3 1 23 1157 1179 1157 1179 0.95 27 28 3.6e-05 0.0031 18.5 1.1 1 23 1185 1207 1185 1207 0.99 28 28 0.00029 0.025 15.6 5.2 1 23 1213 1235 1213 1236 0.96
Sequence Information
- Coding Sequence
- CGAGAAAAAAACGAAAACGCGTCAAATGAGGTTGATTCGGCTGAAAAacctaaatataaaaggagcgCGAGATCCGAAGCTAGGTTTATCACCAAACAGAACGCCACAGCGTTACTAGACTGTTGGACCTTTGTCCCGTTTCGATGGAAagttaatagatttaaatgcGCCTACTGCGAAAGTGGGTTTACAGACTGCACTGATCTCAGAGAGCACGTCGTCGTGTGCGCGGGCTTTCACAAAATTCAGGATATCTATGGAAAATTTAGGGAGATGTCCCTAATAAATGTGGACGTGACCAACGCAGTCTGCAAGATCTGCGCCTGTCCCTTCACAAACATGTTGCAATCGCGAAAACATGTTCTAGAACACAATTTTGAATTCGATGAAACATATCCAGACGGAGTTTTACCGATTAGTCTCAATAAAGACTCTTGGGGTTGCGTTTTGTGCGACGATAAATTCAATAACTTTTTGAAACTTTACGAGCATATGAATGTTCACTATCAAAATTACGTGTGTCCCACGTGTGGTAAAGGGTTTATGACGGCGCAGCGGTTGAGGAAACATTCGGAGGTTCACGTAAAGGGACTATTTCCTTGTGATAAATGTGGACAGAATTTTACAGGTCGCGCTGGTAGGGATTATCATAAAGCTAATGTCCACGCTAAAGGACCTAGATATGAGTGTCCTCATTGCGATATGCGCTTTTCCGGGTACTATCTCCGAATGGAGCACATGAAAGAGGTGCATAAAGTCCAAGAAGTTACGTATAAGTGTGTATATTGTGATAAAACGTTTAAGAGAAGCGGAAAAAGATCCCAGCACGTGATGTCAGAACATTTTCCGGAAAAGCGAAAATTTACGTGCACGTTTTGCGATATGAAGTTCAAAACTAATTATGAATTGAAAAGGCATATAGTTAAGCATACTGGagaaaagaattattcttGTAACGTATGTGGAAAGGGGTTTCTGCGATACGgtTCCGCTAATGCGGATACAAGTAATGTGGGTGTTAAGCCTCTAAAGAAGCTGAAGGAACACGTAGGGCCGCGCCAAATGCGCCGGAGACGGCGAGCCAACAACGAATTAGCAGAGGAATCCGAGAAACGCATCGCCAAAACTATGATGAGGAGAAATGCCTTTGCAATTCTGGAAAATTCTACCGCCTGGGCCTTCCGTTGGTTCCGAAGCGCGTTCTTTTGTTCGTACTGTGACGCTAGATTCCTGGAATCCGACGCTCTGCGCCAACACATTCGTCTGCACCATCTCTACCAAGCTCCTACTAAACGAATTTTCGCGAAACTAACAGAAAATAATATGGTTAAAGTTGAAATATCCGAATTGCGTTGTAGGATCTGTTCAGTATCTTTACAAAGCATAGAAACACTAAAAGAACACTTAGTATCCATTCACCAGAAAACGTTATACAGTGATTACAGTGACGGCGTCCTGCCCTTCAAGCTTAGTCCCAACAATTTCAAATGTCCTAAATGTTCTATAGACTTCATATCTTTCGCTAAAATGAACGAGCACATGAATAGTcattataagaattatatttgcGATACGTGTGGCAAAGCGTTTGTGTCAAAATCTCGGTTTAGGACGCACGTGCAGTCGCACGAAGTGGGAATGTTTCCCTGCGGCCTGTGTGATGAGATACTACAAACTAGGGCAGCCCGAATATGTCATAGGTCGAAGGTGCACCAAAAGGGTATTAGGTACACGTGCCCTCGATGTCCGGAGGTGTTCTCGAAATACTACGTCAGAGTGAAGCATCTAGTTGATAAGCACGGGCATAAGCAAGACTACGATTGCGCGATTTGCGGGAAGTCTTTTGATTCAAGCTGTAAAAAGGCGGCGCATATTCgacTTGAAGTATTGGCCAGTCCAGCAAGTAAAGTGACTATAAAGTGGAAAAAAACGCCCAGAGTAACCGGTGTTAAGGCCTACGCTGCTACGATATTAGAATTCTCTAACGCAATGCCATTTCGGTTTTTGCGCGGAAAACTATTGTGCTCGTATTGTCCCACTATATGCGTTAATATGAAAGAAATGCGGGTACATTCACAAGCTCATGAAAAACTTGAGTTGTTTAGGAATACAGAAATACGAAACTCGTTTCCCATACGAATAGATATTACCGATTTAGCGTGCACGTTATGTAATAAAAGCTTCGAAAAGCTATCGTACTTTATCGACCATTTAACTAGCAAACATAATAAGGTCCTCCACCCTGAAAATAATGGAGTCATACCGTACGTCTTGACGGGATCAGAATTGCGTTGCGTACACTGTTGCTTATTATTTCAATGCTTTATGAGTTTGTGTATACACATGAATAAACATTACCAATCGTGCGTATGTCACGCTTGTGGGAAGAGCTTTTCTGCGAAACATAAACTCACTAATCATATGAAACGGCATGAGTCTGGTCAGTTCAAGTGCCCCAAGTGCGAAATGGTATTCTCCAATCGAGGGCTAAAGGACAGACATGTATCTGTAGCACATGGGCCAAAACAACGGAACCGCTGTCCCATATGCGACGAAACGTTTAATTCTCACCACTCAAGGATGCGGCATCTCGATAAAATTCACGGCCACAAATCAGAGTACCCCTGTAATTTATGCCCAGCTAAATTTGgaCCGGTCGATAAATCAGCCAAGAAAATTATGTGGAAACAGAGACGCAAGTTTAACGATCAAAGAGACAACGCGGCTGTCGTAATAGAGTTTTCTAGCGCTTGTCCATTTCGATGGAGACGGGGCCGTTATTCATGCGCCTTTTGCTCCAGCTCTTTTGCAGACTTTGAAGGAGTGTTAGAGCATAGTACGCAACATTCTAACCGAGTTGATGCCTTAAAACACGCCCGTACCTTTGATTACATTAAAGTCGAAATAACAAATCTAGCCTGTACTATATGTAACGAAAAAATGACGGACCTAGAAAATCTAAAAGACCACCTTCTAGCTGTTCATAAGAAACCGATTATAAAAGACTTAGGATTAGGTGTTACGCCGTTTTTGTTACGGAATAAGGAACTGGTTTGCGCCCATTGCGGAGAGAGATTTCTGCAATTTACTAAGCTAAACACTCACATGAACCAACATTATCCAAATAATATATGCTGTCACTGTGGCAAGGCATTCTCGGCAGCACACAGATTAAAGTCACATCAGCTAATCCACGAAACTGACAACAATAAATGTACGAAATGTGATAAGATTTTTGAGGGTAGGCTCCAGAAAAACAGGCACTTCTATCTTACGCATACTTCTCTATTCCGTTACCGATGCCCTTACTGTAACGAAGCTTTCAAAACTTATTCAGAAAGACTGAAACATTTGAGAAGTTCCCACGGCAAGAAAGTCGAATATCCGTGTAATTTTTGCTCGTCAGTTTTTTCCATGTACAATCAACGTACGAGGCATATAATGCAAgttcatataaaacatagaccGTTTTTGTGCGAACAGTGTCCTTACAAATTTGGTACCGCGGCACAGTTGAGAAATCATATGGTGAAACACGAAGGAGAAAGGAAGTTTCAGTGTGAAGTTTGTAAGAAGATGTACGCGAGGATGAAGACGCTGAAAGAACATTTGAGAATTCATAACAACGATAAGCGATTCGTTTGCGAATATTGTAATAGCGGATTTGTACAAAAGTGCAGTCTTAAAAATCATCTCCGTACTCATCATCCAAACTCGGAAAGCACACAGCTTTGA
- Protein Sequence
- REKNENASNEVDSAEKPKYKRSARSEARFITKQNATALLDCWTFVPFRWKVNRFKCAYCESGFTDCTDLREHVVVCAGFHKIQDIYGKFREMSLINVDVTNAVCKICACPFTNMLQSRKHVLEHNFEFDETYPDGVLPISLNKDSWGCVLCDDKFNNFLKLYEHMNVHYQNYVCPTCGKGFMTAQRLRKHSEVHVKGLFPCDKCGQNFTGRAGRDYHKANVHAKGPRYECPHCDMRFSGYYLRMEHMKEVHKVQEVTYKCVYCDKTFKRSGKRSQHVMSEHFPEKRKFTCTFCDMKFKTNYELKRHIVKHTGEKNYSCNVCGKGFLRYGSANADTSNVGVKPLKKLKEHVGPRQMRRRRRANNELAEESEKRIAKTMMRRNAFAILENSTAWAFRWFRSAFFCSYCDARFLESDALRQHIRLHHLYQAPTKRIFAKLTENNMVKVEISELRCRICSVSLQSIETLKEHLVSIHQKTLYSDYSDGVLPFKLSPNNFKCPKCSIDFISFAKMNEHMNSHYKNYICDTCGKAFVSKSRFRTHVQSHEVGMFPCGLCDEILQTRAARICHRSKVHQKGIRYTCPRCPEVFSKYYVRVKHLVDKHGHKQDYDCAICGKSFDSSCKKAAHIRLEVLASPASKVTIKWKKTPRVTGVKAYAATILEFSNAMPFRFLRGKLLCSYCPTICVNMKEMRVHSQAHEKLELFRNTEIRNSFPIRIDITDLACTLCNKSFEKLSYFIDHLTSKHNKVLHPENNGVIPYVLTGSELRCVHCCLLFQCFMSLCIHMNKHYQSCVCHACGKSFSAKHKLTNHMKRHESGQFKCPKCEMVFSNRGLKDRHVSVAHGPKQRNRCPICDETFNSHHSRMRHLDKIHGHKSEYPCNLCPAKFGPVDKSAKKIMWKQRRKFNDQRDNAAVVIEFSSACPFRWRRGRYSCAFCSSSFADFEGVLEHSTQHSNRVDALKHARTFDYIKVEITNLACTICNEKMTDLENLKDHLLAVHKKPIIKDLGLGVTPFLLRNKELVCAHCGERFLQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKSHQLIHETDNNKCTKCDKIFEGRLQKNRHFYLTHTSLFRYRCPYCNEAFKTYSERLKHLRSSHGKKVEYPCNFCSSVFSMYNQRTRHIMQVHIKHRPFLCEQCPYKFGTAAQLRNHMVKHEGERKFQCEVCKKMYARMKTLKEHLRIHNNDKRFVCEYCNSGFVQKCSLKNHLRTHHPNSESTQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -