Basic Information

Insect: Eurema mandarina
Gene Symbol: -
Assembly: GCA_018238005.1
Location: DWAJ01003974.1:1902-10761[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00023 0.02 15.9 6.5 1 23 119 141 119 141 0.98

2 13 1.7e-06 0.00015 22.6 0.3 2 23 154 175 154 175 0.97

3 13 4.1e-05 0.0036 18.3 2.1 2 23 184 205 184 205 0.98

4 13 0.00025 0.022 15.8 2.1 1 23 211 233 211 233 0.98

5 13 3.2e-05 0.0028 18.6 0.5 1 23 239 261 239 261 0.97

6 13 1.3e-05 0.0012 19.8 7.3 2 23 268 289 267 289 0.97

7 13 3.7e-06 0.00032 21.6 0.7 1 23 295 317 295 317 0.98

8 13 8.6e-06 0.00075 20.4 1.3 1 23 323 345 323 345 0.98

9 13 0.0007 0.061 14.4 0.5 1 23 351 373 351 373 0.98

10 13 0.00087 0.076 14.1 0.6 1 23 379 401 379 401 0.96

11 13 3.5e-05 0.0031 18.5 0.4 3 23 409 429 407 429 0.98

12 13 0.00011 0.0096 16.9 1.5 1 23 436 458 436 458 0.98

13 13 0.00024 0.021 15.8 3.1 1 23 505 527 505 527 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00023	0.02	15.9	6.5	1	23	119	141	119	141	0.98
2	13	1.7e-06	0.00015	22.6	0.3	2	23	154	175	154	175	0.97
3	13	4.1e-05	0.0036	18.3	2.1	2	23	184	205	184	205	0.98
4	13	0.00025	0.022	15.8	2.1	1	23	211	233	211	233	0.98
5	13	3.2e-05	0.0028	18.6	0.5	1	23	239	261	239	261	0.97
6	13	1.3e-05	0.0012	19.8	7.3	2	23	268	289	267	289	0.97
7	13	3.7e-06	0.00032	21.6	0.7	1	23	295	317	295	317	0.98
8	13	8.6e-06	0.00075	20.4	1.3	1	23	323	345	323	345	0.98
9	13	0.0007	0.061	14.4	0.5	1	23	351	373	351	373	0.98
10	13	0.00087	0.076	14.1	0.6	1	23	379	401	379	401	0.96
11	13	3.5e-05	0.0031	18.5	0.4	3	23	409	429	407	429	0.98
12	13	0.00011	0.0096	16.9	1.5	1	23	436	458	436	458	0.98
13	13	0.00024	0.021	15.8	3.1	1	23	505	527	505	527	0.99

Sequence Information

Coding Sequence: ATAAGACTACTCTAcaagtttaataaagatgtGGAAATTTACCAAAAGGTATGTTTTCAGGCTGAAAACGCATTGTCCCTATCATGTTCAGATAACTCTCAATTCATGCAATTCATCGAAGTGCCAGTACTCAATACCAATCAGGTTTTAGAAGGGTTCTTTTCTGAAACCGATCAAAACGCTACTAATGTTACCCAAGAAATACTGCAGAAAGAGGAATTCGATATAGATAAGCTTCAACCACCGGAACCCGAAGCTCCTCAGACGAAAGATGATAAAGGCTTCAACTCTGACGAAGAGAACTATCTCCAAATGGTAGTGTTTCAAACTACATGCGCGGTGGGGCCTGGACGCCATGTCTGTAACCTGTGCCATAAGGAGTTCAAACACGCCCGCTGGTGGAAACAGCATATGCGGTCACATAGTAACTGGATAAAGGCAAACTGCAAGAAGCCACCAAGCTGTCCCATTTGCGAGAGGACTTTTAAGGGCCCAGGCATGCTCAAGATGCACATGAGGACACACGAACAGCGTCCCCCGAAGCAGCCGACTTGCTCGGTCTGCCAGCGGACTTTCCCTACCAAAACCCTCCTATACCGCCACAGACAAACCCACTTCGAACAGAAGACGCACCAGTGCACTGTTTGCGAGAAGAGGTTCTTTAGCGGATACGCACTACGGTCGCACATGGCCAGGCATAGAGGGGAGAGACCGTATATATGTGCAGTTTGCTCCAAAACCTTCTATAACCCGACTGATTTGAAGgTTCATTTCCGTCTTCACACTGGAGAGAAACCACTTAAATGCTCTGAATGCAACAAAGCTTTCCGGCGCCACTCGACCCTTTGCCAACACATGAAGAAACACCGCGGTATTCGCAACCACGTGTGCAATATATGTAACAAAGCCTTCTATGAAGTCTCCAAGCTCAATGCTCATATGCGGGTACATACTGGCGAGCGGCCCTTCGAGTGCCAGTTCTGCGAGCGGCGGTTCGCGCAGCAGTCGGCGCTGATCTACCACCGCCGCACGCACACCGGCGAGAAGCCCTACTCGTGCAAGCTGTGCGCCGCCACCTTCACCACCTCCTCCGCCAGGAACAACCACCTCATAACGCACACGGGGCTCAAGAAGTTCACGTGCCCGGTGTGCCTGAAGGGCTGCGCGTCGCGCTCGGAGCTGCGCGTGCACTCGGCGCGGCACACCGGCGAGAAGCTGTTCGGCTGCAAGCTGTGCCCGCAGCGCTTCAGCTCCGCGTCCTACCTGGCCGTGCACCGCCGCAGCCACGCCACCGCCGCCGAAAAGCACCAGTGCGCCGTGTGCGGGAAGGAATACATGGAGTCCAGTGCATacaagaaacatttaaaaactcaTGAAAAATCCAAGAACGATCAAGAAAGTTCGACAGAGTGCACAGAAGAAGCGAAGAAAGACGAAGAGGCGAAAGAAGTAGAGCAAGAAGAGAATGAAGCGCAGAACGAAACTCAAGAAACGCAGAACGAGCAGAAGAGATATAAATGTGGACTGTGCGTCAAGAGTTACATGTACTTGCACAGTTTGAGGAAACATATGTTGACTCATGTGCAAATGTGTGTGTTCAATCCGGACGGATCTGAAAAACTTTACGCTTTTAGGcAACAACAGCAACTGACCCAGGATCAACAGCAACAGcagcaacaacaacaacagcaACAACAGCAGCAGCAGCAACAGCAACAACACCAGATACAGCAAGTACAGCTGCAACCGCAGCAACAAGTGCAACAGCTGCAGCAGCAGGTGGTGCAAGTTGGGAGCGTGCAGCAACTGGCCGTGCCTATACACCAACATGTTCAGagCGTCCAGCAACAATATCCGGTGATATCTTCGGTGCAATCTCTACAATTACAACAAACACATCaacataacattaatacaCAACCCCAACAACTGCAAgtacaaacaatacaaatcCATCCGCAACAGCAACCCATACAGATTCACacTGTTGGCGTTCAGCAAGTACAACAAGAACAGCTGCATGTTGCTACATCATCTTGCCAAACTAtgatacctaatatattacagCTCCAACCAGCCACAGTAGTGTCAGGTTTGGGTCAACAGGACCTCAGTGGAGTAGCTCATAGGATTATTCTACAGCAACCATCGGCTACACACCCAGCTGTTTACACCATACATCACTAA
Protein Sequence: IRLLYKFNKDVEIYQKVCFQAENALSLSCSDNSQFMQFIEVPVLNTNQVLEGFFSETDQNATNVTQEILQKEEFDIDKLQPPEPEAPQTKDDKGFNSDEENYLQMVVFQTTCAVGPGRHVCNLCHKEFKHARWWKQHMRSHSNWIKANCKKPPSCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYICAVCSKTFYNPTDLKVHFRLHTGEKPLKCSECNKAFRRHSTLCQHMKKHRGIRNHVCNICNKAFYEVSKLNAHMRVHTGERPFECQFCERRFAQQSALIYHRRTHTGEKPYSCKLCAATFTTSSARNNHLITHTGLKKFTCPVCLKGCASRSELRVHSARHTGEKLFGCKLCPQRFSSASYLAVHRRSHATAAEKHQCAVCGKEYMESSAYKKHLKTHEKSKNDQESSTECTEEAKKDEEAKEVEQEENEAQNETQETQNEQKRYKCGLCVKSYMYLHSLRKHMLTHVQMCVFNPDGSEKLYAFRQQQQLTQDQQQQQQQQQQQQQQQQQQQQHQIQQVQLQPQQQVQQLQQQVVQVGSVQQLAVPIHQHVQSVQQQYPVISSVQSLQLQQTHQHNINTQPQQLQVQTIQIHPQQQPIQIHTVGVQQVQQEQLHVATSSCQTMIPNILQLQPATVVSGLGQQDLSGVAHRIILQQPSATHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00710402;
90% Identity: iTF_00710402;
80% Identity: -