Eman008194.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01004154.1:2454-4742[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 9.9e-07 8.6e-05 23.4 1.5 1 23 6 29 6 29 0.95 2 20 0.00057 0.05 14.7 0.2 3 23 36 57 34 57 0.95 3 20 0.00011 0.0092 17.0 0.2 2 23 66 88 66 88 0.96 4 20 5.2e-07 4.6e-05 24.2 1.4 2 23 97 119 96 119 0.95 5 20 2.1e-06 0.00018 22.3 0.9 2 23 127 149 127 149 0.97 6 20 0.00018 0.015 16.3 3.2 3 23 159 180 158 180 0.95 7 20 0.0028 0.25 12.5 2.9 1 23 186 209 186 209 0.95 8 20 0.00083 0.072 14.2 0.4 2 23 217 239 216 239 0.95 9 20 0.0018 0.16 13.1 2.7 3 23 257 278 255 278 0.96 10 20 0.00022 0.019 16.0 0.4 1 23 304 327 304 327 0.96 11 20 0.0089 0.78 10.9 1.9 1 23 363 386 363 386 0.96 12 20 0.0013 0.11 13.6 2.1 1 23 409 432 409 432 0.96 13 20 3.3e-05 0.0029 18.6 0.5 2 23 439 461 438 461 0.97 14 20 0.0014 0.12 13.5 1.0 2 23 468 490 467 490 0.92 15 20 0.025 2.1 9.5 1.3 1 23 496 519 496 519 0.96 16 20 0.05 4.4 8.6 5.1 2 23 527 549 526 549 0.94 17 20 0.00083 0.072 14.2 3.0 1 23 556 579 556 579 0.97 18 20 0.00033 0.029 15.4 0.4 1 23 586 608 586 608 0.98 19 20 0.015 1.3 10.3 2.0 3 23 619 640 618 640 0.96 20 20 9.3 8.1e+02 1.4 0.1 2 15 661 674 660 676 0.85
Sequence Information
- Coding Sequence
- ATGCAGACTCGAGATTTCGTCTGCGATTACTGCAGCCGGTCATTCACCCGGAAATACAACCTCATTACACATATAGAGAACTACCATGTCAACGCAACTTGGTTTTGTGACATCTGTAGCCAGACTTTTGGAAGCTCTTCCGGCTTACAACTCCACTTAAGCCGCGGCCACAACAGACATGGACAGGGATTCCCCGAGTGCGACCTCTGTGGACGCATCTTTACCCGCAAACAGAATATAGTATCCCATATGATATCTGTTCACTTCCAAACGTTACGGACCAGCTCTGTTTGTAATCTGTGCGACAAGACTTTTACATCTCAACGGAATCTGAAAAGGCATTTGAATCAGATACACAACCCGAAGGCACAGTATCCAACGTGCAATTATTGTCAAAAGGTCTTCAAAGGAAAGTCATCGCTCATATCCCATATTCAGACGTTACATGATATAACAGACACGGATTTGAACCACTGCTATCTGTGTGACAAACGGTTTTCGAACACTCGAAATTTGAAACGACACGTTGAAATGCTGCACGGTGAAAGGGAAGAGTATAAATGTGATATTTGTCCCAAAGTATTCATGTGGCATCATAGCCTGAGACGGCATACTATGGCCAGACATTCGAACAGTCCAGAGCAATTGACGTGCGAGTTTTGCTCGAAAACCTTCTATGGCATAGAGAATTTGAAGAGCCATATATCGGTGTACCATAAACAAGATGTAGAGAAGACCTCGTCCGGCGACTCTGAAGCAAAAGTGCACTGTGAGTACTGCCAGACGTCATTCGATCACGAACCGTCGTTGCGACAACACGTCAAACGCGATCACACGTTTGAAATGTTCTACGATTATTGCAAGAAATCGCTTTTAAAATCGTTGACTCAAAGCGAGGGTAGACAGAAATATACGTGCGATATTTGTACTAAAGTTTCAACCACGGTCTACGAACTAAAAGACCATTTGAAAGCCACCCACGATATAGAATACTGTTTATCGACTTGCAATGTCTGTTTCAAACAGTTCTATTGTAAAGATTCAATTGCGGAACACAAAAAGTACTGTCTACCCCCAAAAGGCGTTCACACATGCGCGTACTGCGACAAGCTCTTCACAGACATCTCTAGCTTAGAATTTCACACGCGAATCTTTCATCCTCAAACTCAAATAGCTGATTCAAATATATCGTCCAGTGTCGACGACtcggaaataaatttaacatacaatTGCAGTGTTTGCAGTCGCGTTTATATGAACGAAAGATCTCTAAGACATCACATTAAACTTAACCATTCGTCTGAAGATATCGTGCAGTGTAGTTTGTGccaaaagatatataataataaatattatctcgCGTCGCATATGAAAATGGTGCATTTGAACGATCAAGTTATAAAATGCAGTTTTTGTGCAAAAGAGTTTCGGAGTAAACGCGGTTTGAGCAGGCATATAGAGTTCATGCATACGGGGAAGCCGAGGTATAAATGTATTGAATGCGAAGCGCTTTTCAAAGAAAAACGCAGTTTACGGAAACATGTTAGGTCTAAACATCCTCATTCAGCTATTTTCTCACAATGCCACATTTGCAATAAACGTTTCGAATCGGCCAAATCCTGCAAACTACATCTAAAACTTTTACATTCAGTGAACATGAACACCTATCCTTGTCATCTATGCTCTGTCTCTTTCAGTTCCCACCAATCATTAAACATACACGTGTCAACGAAACATCTAGCTAAAGATGACGtttataaatgtgatatttgcaatatagtttttaacgGCCAGGGGAATTACGACACGCATAGACAACAGCATTTTtgtagaaaagaaaaaaaagtccCATCATGTGTTATCTGTGCGAAAGATTTTAGCGCGCGGCGTACGTTACGTCATCACATTCAGAAATTCCACAAAGAATTTAATGTGGATGATTTATTGTCGTACAGATTCTCGAATAAGAGATTTAACGTCGAATGCGAGAATTGTTTGAGGAATTTCAACGATAGTAATACCTATTTAGGTTCGAAACTTCCGCGAGATTCTATCGTTTTTAAATGCGAATATTGTTGTGCGTCGTATAACGTTCTGGAATTTTCTATTCTCAAACACAAGTTCGATCATACGGAGTCTAGTAAGTTGATACTGAGCGAGTTGTGTACCACCGAAATGAGTGATAATTCAATGAGCAATGATCTGGTGGAAAGCACCACTGTTGACATTAAATTGGAGCCAATGGACGTTCCCgaatatgatattaataatgagTCTGTATCTCCTTAG
- Protein Sequence
- MQTRDFVCDYCSRSFTRKYNLITHIENYHVNATWFCDICSQTFGSSSGLQLHLSRGHNRHGQGFPECDLCGRIFTRKQNIVSHMISVHFQTLRTSSVCNLCDKTFTSQRNLKRHLNQIHNPKAQYPTCNYCQKVFKGKSSLISHIQTLHDITDTDLNHCYLCDKRFSNTRNLKRHVEMLHGEREEYKCDICPKVFMWHHSLRRHTMARHSNSPEQLTCEFCSKTFYGIENLKSHISVYHKQDVEKTSSGDSEAKVHCEYCQTSFDHEPSLRQHVKRDHTFEMFYDYCKKSLLKSLTQSEGRQKYTCDICTKVSTTVYELKDHLKATHDIEYCLSTCNVCFKQFYCKDSIAEHKKYCLPPKGVHTCAYCDKLFTDISSLEFHTRIFHPQTQIADSNISSSVDDSEINLTYNCSVCSRVYMNERSLRHHIKLNHSSEDIVQCSLCQKIYNNKYYLASHMKMVHLNDQVIKCSFCAKEFRSKRGLSRHIEFMHTGKPRYKCIECEALFKEKRSLRKHVRSKHPHSAIFSQCHICNKRFESAKSCKLHLKLLHSVNMNTYPCHLCSVSFSSHQSLNIHVSTKHLAKDDVYKCDICNIVFNGQGNYDTHRQQHFCRKEKKVPSCVICAKDFSARRTLRHHIQKFHKEFNVDDLLSYRFSNKRFNVECENCLRNFNDSNTYLGSKLPRDSIVFKCEYCCASYNVLEFSILKHKFDHTESSKLILSELCTTEMSDNSMSNDLVESTTVDIKLEPMDVPEYDINNESVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -