Eman007903.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01003922.1:3964-12273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0035 0.31 12.2 1.0 3 23 212 233 211 233 0.96 2 23 0.034 3 9.1 0.6 1 22 606 627 606 627 0.95 3 23 4.9 4.3e+02 2.3 0.3 1 22 669 690 669 692 0.82 4 23 0.21 18 6.6 0.3 3 21 703 721 701 722 0.93 5 23 0.77 67 4.8 0.0 3 23 731 752 729 752 0.89 6 23 0.03 2.6 9.3 0.1 3 23 772 793 770 793 0.96 7 23 0.0024 0.21 12.7 2.5 1 23 799 822 799 822 0.95 8 23 0.092 8 7.7 0.0 1 23 848 871 848 871 0.90 9 23 0.028 2.5 9.3 3.3 1 23 876 898 876 898 0.96 10 23 0.052 4.5 8.5 0.1 1 23 904 927 904 927 0.95 11 23 8.9e-05 0.0077 17.2 1.5 1 23 940 962 940 962 0.97 12 23 0.00013 0.011 16.7 1.8 1 23 1011 1034 1011 1034 0.97 13 23 0.0028 0.25 12.5 1.6 1 23 1096 1119 1096 1119 0.96 14 23 0.0013 0.11 13.6 1.4 2 23 1139 1161 1138 1161 0.95 15 23 0.024 2.1 9.5 0.1 2 23 1167 1189 1166 1189 0.95 16 23 0.0072 0.63 11.2 0.2 1 21 1233 1253 1233 1254 0.95 17 23 0.0009 0.079 14.1 0.6 1 23 1264 1286 1264 1286 0.93 18 23 0.00015 0.013 16.5 0.3 2 23 1379 1401 1379 1401 0.93 19 23 1.3e-07 1.1e-05 26.1 1.1 3 23 1408 1428 1407 1428 0.98 20 23 0.00037 0.032 15.3 0.3 1 23 1446 1469 1446 1469 0.96 21 23 0.088 7.7 7.8 0.0 1 23 1491 1513 1491 1513 0.97 22 23 0.0088 0.77 10.9 0.4 1 23 1519 1542 1519 1542 0.95 23 23 0.00019 0.016 16.2 0.4 1 23 1550 1573 1550 1573 0.96
Sequence Information
- Coding Sequence
- atgaATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCCCGAGGCGAATTACTGCCGATATTCcttaccaccagttcggatGACTCGGAACCTCCTGTCCTTGCCACCAAAATCAAGGATTGCGTGTCTGTTCAGATAAACGAAAATGACGAACTGCCCACTAATGTCTGCAGGAAATGCTTGAATAATGTCAATAACTGGCATATTTTCAAGACAGTTTGTGAAAAGACACAAAACAAACTACAGTCTCTGATTCATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAATCTGAACCTAATGAAGGTTTATCAGATGGGGGCTATGATGATGGAGTGGCTATTGATGGAAATTATCCTGATATCGAGAATGCCGCATCATCAAGTAAAATACAACCTGAGGGTCCACCAATATTGGCCTCCTTGGGACTCACTCCAAGAAGTGATAAgGGTATGGAAAGCGAGAAGGACGACGAGGACGAAGATGAAGACATGAATGAAGAACAGAATTATTCGAATCCTCCGAACATGCCGAATGTGCCTGAAGTATCCATTACAGTGATGCGCCCCACCGGAGAAACGTTACACGCTCGACAAGGTATACAGCAGCTGGCGTCCAAAGATTGTCTAGTATGCGGTCGATCCTATAGGTATTCCCACAACGCGCGACGACACGAACTCACAGCGCATAGCTTCGATAGATACACCAATAAGATAACCTCTAAAAAATCCAACCGTATGCAAACAAAACTCAGGCCAAACCCCTTCAACCCTAAAGCAAGATTAATGCCAAATCCCATTAGCCATAAAATGCAACTAATTCCTAACACACCGATGTCTATTAAAATGATGCCCCAAAAAGCTAATATACCACCGAAACCAATAGCAATAAAGAATGTCAAGACCCAACAATCAAATAATTTGCCCTATCCTCTTCGTATTAAAGCATTGAAGGatttacaaataaagaaaaaagaaccTCAAATATTAAAGACGTTGCTTACATCAAAGCCGGAGGTTCTTGTCTCAGAGCCAGAAATTCTTAATTCGGGACCCGAAAGTCCCGAAACATTGATATCGGAGCCAGAGATAGCATCTTTCCAAGTAGAAACAATATTGTCTGAGCCCGATGGGTTCATCAACAATCAGGATGAGGGAGGCGAAAATGATGAAGATGGCCAGAACCAAGGTCAAAATTATGATACAGTTGACATGGATTCAGAGAATGAGTTGGAAATTGCTCGTGAACGTGAAAATGAAGATGACCAAAATGAAGCTCAAGCAGACATGGAAACCGAAGAGAACAACCACAACGAAGAAAACGCTGACGAAGAACAGAATGAGAATGAAGAAGAACATATCGAGGAAGCCTACGAAAGCCACGAAGGTCTCGAAGATAACAAAGATATTGAAGGGGTTGAGAAAGAGGAAGACGAAGAGAACGAGGATAAGGAAATTAATAATGGCGATGAGATTCAAGAAGACGACCCAGACCTCCCCCCACTTGCCCCTGTCGTGGAAATTAATGAGGACATGCAAACCAATTCCTATAACAGCGAGGTCAATGAAGAAGAAGAATTAGAACTTGATGATTCAGCCGACCCCAATGATACAGTAGACGGCGATGACAAGGAGCTCGATCCGGACAAACAGTACGTCACCAAGACGCAACGAGATTTTATTGAGAAATATCGCGATATTATACAGCAGATTAATACAAAGAGGTGTCTTTGTTGTAATAGAGAGCATCCGCGAAGAAAAGCAGTCATACAACATCTCCAGAAAAATGGACATAAAGTTCCGAAACACACCTGTTATAACTGTGTCGTTACCTTCACTCACATTGGCGCTTTGCTCAGTCACATGAGATCTAATACTTGCACTGATTTGTGGAAAATCATTTACAATGAAAACGGTATTACTGATGACCAAGTCCTTGAAGACGAACCTAAGGACCCCAAAGTTCAatacaaagatatatttaacgcCAGGTCATACGCATGCAAGTTGTGCCCAGCGAAGTTCCAATTGAAACAATTCATAATGAAACATGTGCTAGATGTGCACGAGGACGGCCAATCTCGTGTTCATTTGGCGTGTGTGCACTGCGGCTCGCGATTCAAAGATAAAGCCATTTGGAAAAAACATATTCGTAATGGTGAATGTACTGTTTACATCGCTTGCGATCTGTGTCCGGAGAAATTCGGCAATATGCAAGATTTCAATGAGCATGCTCTGGCGGTTCACGCTGGTAGTTTTGACCCTGATAGTCAGAACAAGTGTGTCGATGGACGTCCGACAGATTGTCCCATTTGTGGGAAGAAGAACAGCGGCTACCCGAATttagttaaacatttaaaaattattcataatgaAGAGAAACCGCATTATTGCCAACATTGCGATGCTAAATATGAACAAGCCACTGAtcttaacaaacatatttatatggagCATTCTGATAAGGTGTTGGGCTTACAGTCGTCAGAACCCGACATGTCGCTCGTTAAAGAAGAGACTGAAGAATATCATTACTCTTGCACAGAATGTAACGCCATATTTGAAACTGTCGACGCTTGGACTGACCACCAGGTCGCTGAGCATAATCAAATCGCTCATCACTGTGATCAATGCGAAAAGAAGTTTTTGCGACCATCTGAATTAGCAGAGCATAAAAATAGTCACTTGCGCGTCAAGTTTTACCCTTGCGGGAGCTGTCCGAATTCATACAGCACTCCACAGAAACTATCGGAACACGTACAGCAAGCTCATCCTGGAATGGGAGTGAGTGTGGGAGGAGAAACTGAATTTTTCTGCGACATTTGCGTGAGATCGTTCAAGAGCCGTCAAGCTTTTTCAAACCACATGCGTATTCACGCTAAAGTACCTACCACTAACCGAAAACCCGGCGAAGGCAAAGGTTTCTCCCCTTCGATAATTGGCAAACCGATCCGACATTTCTCTATGGTACAACCCGGATTTACTCCGTTCAAACCTAATTGCAATGTCCCGAACGCACCGTACTCGTGCGACATTTGTGGCAAAGGATTCAtgcataagaaaaatatttggaaaCATAAGAAGGTGTTACATGCAGATATTTTGAACGATAGGAACGACAGCGAAGAGAACACGATGCACGCCTCCACAGAAGAGGACGAGTATAATCCGGATGAGAATGGAACTACTCTGACCACACCTCAATTTAACAGCTTTAATTTCGCTAATCTAGCTACTACCATGCAGTCGACACCTGCGCAAGAGCCCACTACCCCATATACGTGTGAACTATGTTATAAACAATTCCCGCTTAAAACCAGTTTGTGGAAACATAAGCGTGCCAAACACGGAATTATAAATGCCAGTGCAACGGATAATTCGATCGAGGTCAATAACAGCAGGTCAAGTTGtactatatgtaaaatttcGTTCGCTGACAAGAAATCTTACTATCGCCACAGGAAAAACGTGCACAAGTCGAATGTGCAGATGTGTAAGATATGTGGCAAGCCACTCAATTCTACTTTAGAACTCTATGAACATCTGAAGTCGGCTCATGCCAGAGAGCTGCTAGGATACAATGCGAGCCAGGGCACGAGCAAAACGCAAGACATGTCCAACGAAATGGAAATTGAATATGATCCCGAGCCAGAGGCAGTCGATCCCAGTGCCGACTACCAAGCTCGTTACCCGTGTGATACGTGCGGCAAGCAATTCGTCGGTCTACTCGCCTTGCAGAATCATCAGTGCATAAACCAGGTCACGCAACAGCCTGCGACGTTCGATTGCGAAATTTGCCACAAGAGTTACACGTCTATAGCTGCCCTTAAGAGCCACCGCGGCTGGCATGTGCGGTCGCCCGACGGTAAGGCGGCCGCTAATAATAGCGGCCTATGGATGCCACACAACAAGGTGACCAGCAAAGTCAGCAAGTACGAAGTCGTGGACCCCTCGCAACTGGCACGCGTCACGCACACCACCACCAGCTCGGCGTCTATCGCCGCTAAGCGAAGATTACCGCCAGAAGTAGAAGTGACCGTGGTCAACCCTAACAAAAAGTTACGTTCCGATGATTCCATAGATACGGACCAGCAGAACAACGTCTCGTCGGGGGCGGACGACAGGTACTGCAATATATGCGATCGGGAGTTCACAAAACGCGCCGCGTACCAGCGGCACATGGACGAGGTGCACCAGCCGAACTCGGTTTTCTGTCCGGTTTGCGACAAGAGCTTCACGCGGAAGTCGACGCTGATCGTGCACATGAAGAAGCACTACGACGCCGGCGAGGGCAGCTCGAGCATGACGGCGCAGGACGACGACGCGCACGCGTGCGACGTGTGCGGCGAGCAGTTCGACAGCGAGAAGGCTCTGAACGTCCACCGGAAGACGGAACACGGCGATGAAGAGTCGAACGAGTCTGAGGACGACGGCTCCGTGCCGTTCCCGCAGCCCGGCGAGTTCACGTGCGGGCAGTGCGGGGACGGGGTGGCCACCCCGCGGGACCTCATCGCGCACCGCACCATGCACTCGACGCCCACAAAATTCTTTTGTAACATTTGCAAAGTCTACTTCGCGAGGGCGATCGACCTGTCCTCCCACACGAGAGCGAGACATTCGGATAATGAAAAAGTGTTCTTCCCGTGCGCCATGTGCGATcgattttatatgaataagaaGAGCTTACAGCGGCACATCGAGATGGCCCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFLTTSSDDSEPPVLATKIKDCVSVQINENDELPTNVCRKCLNNVNNWHIFKTVCEKTQNKLQSLIHKESSHLEEIHIKSEPNEGLSDGGYDDGVAIDGNYPDIENAASSSKIQPEGPPILASLGLTPRSDKGMESEKDDEDEDEDMNEEQNYSNPPNMPNVPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITSKKSNRMQTKLRPNPFNPKARLMPNPISHKMQLIPNTPMSIKMMPQKANIPPKPIAIKNVKTQQSNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDGFINNQDEGGENDEDGQNQGQNYDTVDMDSENELEIARERENEDDQNEAQADMETEENNHNEENADEEQNENEEEHIEEAYESHEGLEDNKDIEGVEKEEDEENEDKEINNGDEIQEDDPDLPPLAPVVEINEDMQTNSYNSEVNEEEELELDDSADPNDTVDGDDKELDPDKQYVTKTQRDFIEKYRDIIQQINTKRCLCCNREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDQVLEDEPKDPKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKAIWKKHIRNGECTVYIACDLCPEKFGNMQDFNEHALAVHAGSFDPDSQNKCVDGRPTDCPICGKKNSGYPNLVKHLKIIHNEEKPHYCQHCDAKYEQATDLNKHIYMEHSDKVLGLQSSEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCGSCPNSYSTPQKLSEHVQQAHPGMGVSVGGETEFFCDICVRSFKSRQAFSNHMRIHAKVPTTNRKPGEGKGFSPSIIGKPIRHFSMVQPGFTPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMHASTEEDEYNPDENGTTLTTPQFNSFNFANLATTMQSTPAQEPTTPYTCELCYKQFPLKTSLWKHKRAKHGIINASATDNSIEVNNSRSSCTICKISFADKKSYYRHRKNVHKSNVQMCKICGKPLNSTLELYEHLKSAHARELLGYNASQGTSKTQDMSNEMEIEYDPEPEAVDPSADYQARYPCDTCGKQFVGLLALQNHQCINQVTQQPATFDCEICHKSYTSIAALKSHRGWHVRSPDGKAAANNSGLWMPHNKVTSKVSKYEVVDPSQLARVTHTTTSSASIAAKRRLPPEVEVTVVNPNKKLRSDDSIDTDQQNNVSSGADDRYCNICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGSSSMTAQDDDAHACDVCGEQFDSEKALNVHRKTEHGDEESNESEDDGSVPFPQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -