Eman008945.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- clz9
- Assembly
- GCA_018238005.1
- Location
- DWAJ01004686.1:9440-11423[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-08 6.7e-05 23.1 0.0 1 41 18 58 18 62 0.94
Sequence Information
- Coding Sequence
- ATGCCATCCAAGTATCACCGAAAACCCGGCAGTCGCCGATATGTAGATTACACTAAAGATGATTTAAAAGAATGTTTAGCAGCAGTGAAATCCAAAATGCTTACACAACGAGCTGCTGCCGAAAAATATCGTATACCTCGtagtactataaaaaataaattacgtggCAAATACCTTAACAAACCTGGGCGCCCAACTGTATTTACGGAAGAAGAGGAGACGGTGTTCGTTGCCAACATAACGGCTCTTTCTGAATACGGATTTCCTCTCACTgattttgatttgaaaatgtttatccGAGATTACCTTGCATCCCAAGGGAGGACTGTAaatcaattttcaaataacgTCCCTGGTAAAGATTGGATGAAGGGTTTTTTGATAAGACACAAATCTTTATCGAAACGCCtagcaaataatattaaaagagtgAGAGCTCAAGTGTCagaagaaataatttcaaaattttctgAAAACATTGCCAAAGAAACGGAAAACGTGCCACCGGAAAATATCTACAACTTTGATGAAACGAATCTATGCGACGACCCTGGAAGAAAAACTGTTATTTGCAGACGAGGTACAAAATATCctgaaaacataattaatgcAACGAAGGTATCTTTCAGTGTTATGTTCTGTGGCAATGCTGCAGGAAATACCATACCCCCCTTCATCATTTATAAGTCTGAACACCTGTGGACAACTTGGATGGAAAATGGACCAGAAGGTGCGCGCTACAATAGGACCAAAAGTGGATGGATTGACGCTGAAACCTTTGAAGACTGGTTTCTTAGACATTTGCTTCCGATCCTCAAAAAACAAATTGGCCGTAAAGTAATTATTGGAGACAACCTTTCTTCACACATCAACTCAAGAGTCTTAGAGGAGTGCGAAAGAAACAATATTGCGTTCATCTGTTTACCCACCAATTCTACTCATATTCTCCAGCCTCTAGACGTTGCTTATTTTCGgccattaaaatgtttgtggAGGCAAGCATTGCTAAAGTGGAAAAGCTCTCAGATTGGGAGGAAACTGCCTGCACTGCCAATAGAGCAATTTCCTTGTTTGCTGAAAGAAACCATAAATTCAATGGTTCAATCCAAAGAAAACTTGATTGCAGGTTTCAAAAAGACTGGAATATACCCCGTTAACGCACAAGAACCGCTAAATAGACTACCAAGACAAGACCGCATCACACATGTCGATCTCATTTCCaataatttcattcaaaaattaCAGCAAACTCGGCTTGACGTGTGCGCAGAAGGAAAACTTGTTAGGAAAAGAAAAGTTAATATTCCGGCGGGAGTCTCTATTTGCGCTACTGACTTAGATCAggcaaaaaacaaaaAGGATCAAGTTATTTCAGACGATGATTCTGACGCTGATGTGCCACTATCAACTATAGCCCACGTTGAGCCTGAAGAGTGTAAAGTTGTTTCAGTATCTGAAGAAGCTGTGCTTGTATCGTGCATGAAGAAAGGAAAATCCTTCTGGCGTTGGCCGGCCATCAAAGATGAACAACTTTACAGTTGGGCTGATATAAATTGCAAGATCGCAGTCCCTAAATTTATGCAAAAGGGCTGCTTTAAAATTCCAGAATTAGATGATTAG
- Protein Sequence
- MPSKYHRKPGSRRYVDYTKDDLKECLAAVKSKMLTQRAAAEKYRIPRSTIKNKLRGKYLNKPGRPTVFTEEEETVFVANITALSEYGFPLTDFDLKMFIRDYLASQGRTVNQFSNNVPGKDWMKGFLIRHKSLSKRLANNIKRVRAQVSEEIISKFSENIAKETENVPPENIYNFDETNLCDDPGRKTVICRRGTKYPENIINATKVSFSVMFCGNAAGNTIPPFIIYKSEHLWTTWMENGPEGARYNRTKSGWIDAETFEDWFLRHLLPILKKQIGRKVIIGDNLSSHINSRVLEECERNNIAFICLPTNSTHILQPLDVAYFRPLKCLWRQALLKWKSSQIGRKLPALPIEQFPCLLKETINSMVQSKENLIAGFKKTGIYPVNAQEPLNRLPRQDRITHVDLISNNFIQKLQQTRLDVCAEGKLVRKRKVNIPAGVSICATDLDQAKNKKDQVISDDDSDADVPLSTIAHVEPEECKVVSVSEEAVLVSCMKKGKSFWRWPAIKDEQLYSWADINCKIAVPKFMQKGCFKIPELDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00752020;
- 90% Identity
- iTF_00752020;
- 80% Identity
- -