Eman021722.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01021733.1:490-3219[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-10 8.8e-08 32.3 0.0 4 41 134 172 131 175 0.90 2 2 2.3e-05 0.019 15.3 0.2 4 27 188 211 185 211 0.91
Sequence Information
- Coding Sequence
- AATACAGAACTTCTGCCAATTAAATTAGACCCGGAGTCACATTACGAAGACAATGTTTCAACACATTTACTGGATCAATTGTCgTTTTCTTCAGAGCTGGTGCCGGTACCAGCCGCTCCAGCTGCTACACCAGTTCCCGAAGACTTGCCAGCTCCACATGAGACCTCCTTGGCTATGTTACAACCCGCTAAGAATACTACCCTGGGTTCAGCGTTAATAGACAAGCACTTATCAATGATAAGATCAAATGAAATTTTGGATTCATCAGACTTTGCTCCATTGCTAAACATTAAAGACGAACCTCTCTCGGAAGGAGAAAGTCAACAGCTAAGCAGCGACGAAGCAAGCGAAAACTTTCCCGAGAGCAGTCGTGGCGCACCGAAGACCTGGTCACAAAAGGACATGGAAAAAGCTCTCGATGCCCTCAAGAATCATAATATGAGCCTTACCAAGGCATCAGCAACCTACGGCATTCCATCAACAACATTATGGCAAAGGGCTCACAGGCTGGGCATCGAAACGCCGAAGAAGGAGGGTTCCGCCAAGACTTGGAGCGAGCGCGACCTCAAGGGGGCCCTGCACGCGCTCAGGACTGGCGCCATCTCCGCCAACAAAGCCAGCAAAGCTTATGGTAGAGACTACTTTTATTAA
- Protein Sequence
- NTELLPIKLDPESHYEDNVSTHLLDQLSFSSELVPVPAAPAATPVPEDLPAPHETSLAMLQPAKNTTLGSALIDKHLSMIRSNEILDSSDFAPLLNIKDEPLSEGESQQLSSDEASENFPESSRGAPKTWSQKDMEKALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIETPKKEGSAKTWSERDLKGALHALRTGAISANKASKAYGRDYFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -