Eman023288.2
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- bab1_1
- Assembly
- GCA_018238005.1
- Location
- DWAJ01025210.1:1-2361[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 1.1e-14 54.5 0.0 1 43 73 116 73 118 0.95 2 2 4.1 3.4e+03 -1.6 1.6 6 15 209 218 205 220 0.83
Sequence Information
- Coding Sequence
- ATGTGCACAACAAATAAACAACTGAAGATTTATCAAGTTTTCTTCATCATCCTGTTCGCATCTGAAAGGTGTACAAAAGTGTACTGCTACCAAGAGCCGCTACAAATAGATAGCTACCAGTACCAGCTGCAATCGATGTGGCAGAAGTGTTGGAACACCAATCAGAGTCTCGTCCACAACCTGCGGTTCCGTGAACGCGGCCCGCTCAAGTCCTGGCGACCGGAGACCATGGCTGAGGCGATCTTCTCAGTCCTCAAGGAAGGCCTCTCCCTCTCACAAGCTGCACGGAAATACGACATACCATACCCGACGTTTGTTCTCTACGCGAATCGAGTCCACAATATGCTGGGACCCAGTGCTGACGGCGGTACAGATTTGAGGCCGAAAGGCCGGGGTCGACCACAGCGCATCTTGCTCGGCGTGTGGCCCGACGACCACATCCGAGGCGTGATCCGCGCCGTGGTCTTCCGCGACTCGCAAGCGTCGCACGCCGCTCACCACATTAAAGAGGAGGTGCTCCCGGTCTATCCGCAGATCACGGATGTAATGACGGTGGGCCAAAGTCCGTACCCGGTGCCGTGCGGCAACGGGCGTGAAGGGGGCGTCTCGCCGAACGcagccgccgccgccgccgtgGCCGCCGTGGCCCACGGGCTGCGCCGGCAGATGTGCAACATGGTGGTGGCCGCGCAGAGACCGCCGGCCCACCCGCCGCACCTGGGCCTGCCGCCgctgccgccgccgccgccgcccttGCCCTCGCCCC
- Protein Sequence
- MCTTNKQLKIYQVFFIILFASERCTKVYCYQEPLQIDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGVWPDDHIRGVIRAVVFRDSQASHAAHHIKEEVLPVYPQITDVMTVGQSPYPVPCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPAHPPHLGLPPLPPPPPPLPSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -