Eman016278.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01012418.1:2-1751[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-16 2.5e-13 50.1 0.1 4 45 1 43 1 43 0.97 2 2 2.2e-18 1.9e-15 56.9 0.0 1 43 50 93 50 95 0.96
Sequence Information
- Coding Sequence
- GACCTGGCGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCTCGCGCTACGGCATCCCCACGGGTACGTTATATGGACGTTGCAAAAGAGAAGGCATCGAGCTATCCCGTTCTAATCCCACGCCTTGGTCCGAAGATGCTATGGGAGAGGCACTTGAAGCTGTCAGGATCGGCCAGATGTCCATCAACCAAGCTGCGATCCACTACAATCTGCCGTATTCCTCATTGTATGGTCGCTTCAAGAGATGCAAATATCAGGTCATTCAGgatCATCAACAAACACAATATCAAGACAGGCCAGAGAGCCAAGAACAAACTCAGAACGCAGAATTCCCTCACCACGTGCCTTTGCAAAGCTACGACACGGATTTGCAGTACATGAGCGAAGTTTCTTCCATGCAAAGTTTACAAGAGCATTACAGCCAAGCAATGTATTACGCGCAGTGTAATGTTTCCAGCTGA
- Protein Sequence
- DLARALAAIRCGAASVQRAASRYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQVIQDHQQTQYQDRPESQEQTQNAEFPHHVPLQSYDTDLQYMSEVSSMQSLQEHYSQAMYYAQCNVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -