Ehec002195.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010000147.1:337590-346447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.6 2e+02 3.2 4.4 1 23 228 251 228 251 0.96 2 9 0.34 25 6.0 3.5 1 23 258 280 258 280 0.97 3 9 0.1 7.5 7.7 0.9 1 23 284 306 284 306 0.96 4 9 0.00061 0.045 14.7 3.7 2 23 312 333 311 333 0.98 5 9 0.00016 0.012 16.5 0.1 1 23 337 360 337 360 0.90 6 9 2.2 1.6e+02 3.5 1.7 2 19 375 392 374 394 0.92 7 9 0.011 0.85 10.7 3.0 2 23 433 455 432 455 0.96 8 9 2.9 2.1e+02 3.1 0.0 1 23 467 488 467 488 0.75 9 9 3.6e-05 0.0026 18.5 0.2 1 21 494 514 494 515 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGAGAAGCAACTTCCTGAATATTTTTGCTTTGAATGTTTGCATATGTTGCAAAAGTGTCATAAGTTCAGAGAGAAGTGTCTTACAAGTCATAAAATTATGCTGGAAATGCAGTGGTGTAGTTCGCTAACATATGAATCAATAAAGAAAGTGGATAGAGAAAAATTACAATTGTCATCTACTCTACGGACAAGTTCAATTTCAAACATAAGCTACTTACAAATCATAGATAATGATGATAGGGTAGTAAATGAAACTGAAGAAAAAGGTACCATAGACAATCTAGGCTGCATACCAAAAACTGAAGTGACAGATGACATATTATATAGACATTACACAGATAAGGTAGATATTGGAAAAGTTGAAACTACAGATAATGTAACCAACATAGATAATATCGAAAATATAGTCATAGAGAAGACAGAAAATTCGACGGATAGTGATTTAGGATTAAGTGATATAAATGAAGAAATATTCTGTGAGGAATTAGATAAATTGTATGAAACGAAACTGACTGAACGACGAAACAGAAGGAAAAAAGGTCAATATAAAAAGAAACAGACTTTTAATGTTATATCGAACAGTAGTAATTGGAAAGTCTGTACATTAACTGAAGAAGAGGCTAAAGAGATGTTTGAAAACCGGGCTTACAATGATAAATATATACAGGCATCTTTTAAATGCTCACATTGTATGAAATGGTTCTCATCGCACGATATCATGCAACGGCATATGGAAATAAAGCATGCTGAGTGGCGAGGCAATTACGTGTGTAATTTTTGTCAAGTGCGTACGAAATTTGCGTGTACTATGCGCAACCATATTAAAGATCATTACACAAAGTTTAAGTGTGTGCGGTGTGACGTCATTTTCTCGTCAGAGAAATCTGCTTTGCACCATGAAGAGTCTCATAGTGGTGTTAAGAAGAAATGTGTTTACTGTGACGAGACTTTTAGGCACATCTCAACGTACTACTCGCATCTCCGTAAGCACAGGAGTGGGTATATATGTCCCACGTGTGGGAAATCGTTCGTGAGTGGGGCTGGGCTTAGACAGCATAAAGTCAACCAGCATAGATGGCAATCGGAAGCACCAAAAGATGACGATGACAGTACTTATTGCGAACGATGCGGTATTGACTTCGATTCCCGGTGTGCTTTCGACAAACATTTCTTCCATTCAGCCCTGCATGGGGACGATGATTCCACTGATTTCTTACAAGAGAAAATCAAACCAGTAAAGAAGAAAGGAAAATTAAAGAAGTACTCAAGACCGAAAATCAAACCGACAACgtgctatcagTGCGGTGAATCATTTCCGACGCAAGCGGCCTGCATGAAGCACCACAGGAGCGAGCACAGCGGTACTTCCTTCTATTCGCCGAAACAGAGGTATATATGCGAGATATGCGGCGTCAACCTCGCTCCCGGTAGTATGGTTTCGCATCAAAATTTACACACGAAGGAGAAAGTCCACCCGTGCCCGCACTGCGGCAAGAAGTTCTACGCTAGAGTTGCCCTCAACCGACATATACTGGTAACACTGACATTTTTTCTTTATTTTATAGAGTTTGGAGCAATATCTGCCAGCCAAGCTCAAtaa
- Protein Sequence
- MDEEKQLPEYFCFECLHMLQKCHKFREKCLTSHKIMLEMQWCSSLTYESIKKVDREKLQLSSTLRTSSISNISYLQIIDNDDRVVNETEEKGTIDNLGCIPKTEVTDDILYRHYTDKVDIGKVETTDNVTNIDNIENIVIEKTENSTDSDLGLSDINEEIFCEELDKLYETKLTERRNRRKKGQYKKKQTFNVISNSSNWKVCTLTEEEAKEMFENRAYNDKYIQASFKCSHCMKWFSSHDIMQRHMEIKHAEWRGNYVCNFCQVRTKFACTMRNHIKDHYTKFKCVRCDVIFSSEKSALHHEESHSGVKKKCVYCDETFRHISTYYSHLRKHRSGYICPTCGKSFVSGAGLRQHKVNQHRWQSEAPKDDDDSTYCERCGIDFDSRCAFDKHFFHSALHGDDDSTDFLQEKIKPVKKKGKLKKYSRPKIKPTTCYQCGESFPTQAACMKHHRSEHSGTSFYSPKQRYICEICGVNLAPGSMVSHQNLHTKEKVHPCPHCGKKFYARVALNRHILVTLTFFLYFIEFGAISASQAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -