Ehec016503.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010005620.1:4586298-4604835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.32 24 6.1 1.3 1 23 168 190 168 190 0.97 2 13 0.37 27 5.9 1.3 3 20 243 260 242 260 0.96 3 13 0.0092 0.68 11.0 2.4 1 23 281 304 281 304 0.94 4 13 0.054 4 8.5 0.1 2 20 341 359 341 361 0.92 5 13 0.27 20 6.3 1.8 2 23 367 388 366 388 0.94 6 13 2.4 1.8e+02 3.3 0.7 1 23 948 969 948 969 0.92 7 13 0.12 8.6 7.5 1.4 3 23 1015 1035 1014 1035 0.94 8 13 0.43 31 5.7 4.5 2 23 1051 1072 1050 1072 0.93 9 13 5.3e-07 3.9e-05 24.3 2.6 1 23 1078 1100 1078 1100 0.99 10 13 0.00065 0.048 14.6 3.1 2 23 1106 1127 1105 1127 0.96 11 13 6.9e-05 0.0051 17.6 2.1 2 23 1132 1154 1131 1154 0.96 12 13 1.9 1.4e+02 3.7 0.4 1 20 1161 1180 1161 1182 0.90 13 13 0.063 4.6 8.3 0.1 3 23 1193 1214 1192 1214 0.93
Sequence Information
- Coding Sequence
- ATGGAAGGCGATAAGAAAAGAAGTAGAAAAACAAAGTTGGTGCCGCGTGATCTTAGCGATTCGGACAATGAATTAGAAGAATTGCAGAATGAAGTAGAACAAACGCTGGCCAGACTAAAAGGAACAAGTAAAAAGCGTAAGGAAGAAATTATAAATCATCCCGTTAATAACCAACCTTCCCAGTTTTCTATAAAGGTGGAAGTTGAAGAATGTGACGATGATGAGGTTCTGGTGGTACCCAGTTCGGAAGAAGAGCCTTCAGAGCATGAGGAAGACATATGTAGCTTAGAACTTATGGGTATGCTAAAAGCTTCCTCAGATCTTGCGAGAGACAGCCCTAATATAGCTGACAAAATTCTACATTTACAAAACTTGAATTACTGCAAACCGCCTTTTAAACCTCACGTTAAAACCTACCATGAAATCATGATAGAAAAAGTTTTTATGAGGTGGCAAGAATGGTTAAGATTAGCCTCGGATGTGAGAGAAATACCACTCTGTTATAAATGCTATATCTGTGATCGCGCTTGGTGGCATTTGAGCGAATTCCAAGATCACATGTACACACACAAGATGAGAACGTTTTGCATAAGCTTTGAAATTGTCAATTGTATAGAATGCAATATAGTGGCTCACTTCGATATATTGGAGAAGAGGTTTATAGATCCAGGTACAAGATGTTGGAGGTGTGGCGATATGGGGAGTGCTCATGACAGGCCGAAAATCTGCCCAGGCTGTAATAAAGATCTATTTTCCTGCTCAAAATTGAAAGACCATCAGTGGTACTGTAACCTCTTCAAAGCGAAGAACATAAAGCTCTTTCAAGCCGCTAAAAAGATGTATAAATGTCATCTATGCCCGCAATACTACTTTCAGGAGAGTAGTTTATTCGATCATATGGTGTTAAGGCATACAGTGCGATCTGATGTGCCCCTATCAGTGAGTTTAGAGACGTGTGTAGATTGTAAGCAGAATCTACCAGAGTTCCATCATGTGTGTCCGTATAGATTGTGTATGGAAGTATGTGCTAATTGTAATCTACGTTTTGCCTCAAAAGAGTTGTTGAATCTTCACAAATTGGTGACCAAGAAAGCTCTGAGATGTCCTATTTGTAACAAACATATAAGGAGGGAGTGTCTGCTGCCCATTCATATGGTGAAGCACACGCATAGGTTTTGCCTATTATATAAATGCCTGGTCTGTCCGAAGCCAGTTTACTTTGATCCAACAAAGCTATCGGATCATTCTAAACAGAAACATGTGAAATTCGGATGTTCCATTCCATATGATATTGTTTTTGTGCCTAGTGATTACGAAGGGATCACTTTTAAAAATAATGCGAAGTTACCAGTACCTTCGAATGTGAAGTTCCGTGTGCAAGCTGCGTCTTCCGAGGTGAATCAACCCACTTGTACAAAAAATTATCGCATAGACTCAAATGGACGAATTATCAATAATAATGACGAAATTAGTGAAATAGTCGAATCGAATAGTAAAATTGCAGAAAATTGTATCAAGAATGACACAATTGAACCGAAAAGCAAGAAGGATGTAACTAAAAATGATGAAATAATTAAATCACAGACTAGTTCTAATAAAGCAAATAGAAAGAATAAAAAGAAAGCCGACAATGTTAAAGAACAGGAAAGAATTGATGTGCATAATGCTAAAAGTACAAAAACTATTCAAGTTATAAAAGAAGGCAAAGATGTTAATTTAAAAGCAAAAACAGATAATACAAAAACCTACAGAGAAGAAAATCGCATTGATTGTAAAACGGAAAAACCTGAAAATGGAGAAAAGCACATTCAGAATACTAGAGATATAAATTGTGTCTTAATAAAACAAGAAAAACTAGATGAAAATTCAATAGAAAATAATGAAATTGATGTTGAAAACATATCCGATTTGATTACTAATATTAAAAGTGAATTCGATACAAATAAAGAAGCAGAACTGACACCTATTATATCAAATGTAATATCAGTTCAAACTTTAGATTATAAAACGTGTAGCAAGGCTAAGGAAATTGAAGTAGTTATAAAATCAGAGCCTCAAGACTATTTAGAAGAAAGAGACAAGAAAACTAGTAATAACGAAGAAAATATAAATAAAGTTTTAAATTCAGCAGCGACTATAGAAATTAAAGTATCAAATAAAAATAATGATTTGAATATTAAAGAAGAGCCCCTATGTAATGATATTAAAGATATGAGTCTAACGCTGAAAGATATTAGGAAGATATATCATATAGATGTCAATGTATCAGCAAACACTGCAAGTGATCTTAATATAGATCAAAAAATAAATATAGACGGTGATAGTGAGAATAATTGGGAATTATTGTCCAATGTCTTTGAGAATTTCAATGAAGTCACAGCTGATAGCGGTGAGGAATATGAGAACGATTTAATTATTTTAGAACCCAAAGAAGATGTATTAGTCGTTGATTCCGATTCAAGTAGCAGTTCCGATAGTACTTCTACTAGAAGGGATGAAACGTCGAGAAGGTGCAGAATCTATCAGTGTCAGAAGTGCTCTTTCCGTGGCGTCTACAAAGAATTTACCAAACACAAGCGGGAGGACTGCCTTAGCCGTGAGAGTTACCCGCTGATGCAGTCGCAGACCTTCACCTGTACACCATGCAACACCAAATACAAAACATTCAAGCGGTATTTGAAGCATTTCAAGCACCACGGCTACCCGAAACATGCGTGTCCACAGTGCAGTGCTATCAGTGATAAAAGTGATAATAATGACCGGCATGTGTCTTGCCACATACGGGCAATGTTTGTTAGTTACCGCTCGATTCAATCAAAAGAGTCGTGTTCAAAGTTCAGTTTTCGGTGTAAATTGTGTGATGTGAACGTGGATAGGACTGATTTCTTCGAGCATTGGGAGAAGCATCTGGTGATTAAGAATTGGAGCTCCAGTACTGTCGTGAATCATAAGAAACATGTTGGACCGTATGTTAAGAAGGTTATTGAATTATTACTAAACCCGGATAAAATGAACCGGGCGATGTTGAGAAGCTACCGGGCGTGTGTGGTGTGTGACCGGAAATTTAACCGGAAAAATGATTGCGTTCGCCACCTCATAGAGCACCTGCTAGTCGACGCGTTAAGGAATAAAGATAAATATTCCGGACTCCGGTGTCAGATATGCGATGAAGAATTTCATAAAATAGACAGGTACCGTCATCACTTGCGCTTCCACGCGTCTCTCCCCGTCTACAAGTGCGAGCTGTGCGACAAATCGTTCAGTGACTCGAGTAATTTCTCCAAGCACAAGAAGGTGCACAATATGAAGATTGTCGTATGCGATATATGCCAGAGGAAATTCCATAATAAAGACTGCCTGATAAAACACATACAGGAGCACGAGGGGCCGCAGCAGTGCCCCGAGTGCGAGCGCTGCTTCTTCTCGGAAGCGTCGCTTCGCAAGCACCAGCGCGCTACGCACGACAAGCACGCGCTGCGCTACAGCTGCCGCCAGTGCGACCTGCGCTTCGTGGCGCTCAAGCACAAGTGGGACCACATGTGGCAGGTACACAAAGAGAGACCGGTTCAAGCCGATTGTGCTATCTGTGGCGCGGGATTTAGGAAAATGCGTGACCTCAAGTTACACGTTGAAAATGTACACTCGTTAAAACAACCCAACCAGATAGATATTAAAATCGAGAATGAAGAAGTAGAAAGTACGGTAAGAAATGATTGA
- Protein Sequence
- MEGDKKRSRKTKLVPRDLSDSDNELEELQNEVEQTLARLKGTSKKRKEEIINHPVNNQPSQFSIKVEVEECDDDEVLVVPSSEEEPSEHEEDICSLELMGMLKASSDLARDSPNIADKILHLQNLNYCKPPFKPHVKTYHEIMIEKVFMRWQEWLRLASDVREIPLCYKCYICDRAWWHLSEFQDHMYTHKMRTFCISFEIVNCIECNIVAHFDILEKRFIDPGTRCWRCGDMGSAHDRPKICPGCNKDLFSCSKLKDHQWYCNLFKAKNIKLFQAAKKMYKCHLCPQYYFQESSLFDHMVLRHTVRSDVPLSVSLETCVDCKQNLPEFHHVCPYRLCMEVCANCNLRFASKELLNLHKLVTKKALRCPICNKHIRRECLLPIHMVKHTHRFCLLYKCLVCPKPVYFDPTKLSDHSKQKHVKFGCSIPYDIVFVPSDYEGITFKNNAKLPVPSNVKFRVQAASSEVNQPTCTKNYRIDSNGRIINNNDEISEIVESNSKIAENCIKNDTIEPKSKKDVTKNDEIIKSQTSSNKANRKNKKKADNVKEQERIDVHNAKSTKTIQVIKEGKDVNLKAKTDNTKTYREENRIDCKTEKPENGEKHIQNTRDINCVLIKQEKLDENSIENNEIDVENISDLITNIKSEFDTNKEAELTPIISNVISVQTLDYKTCSKAKEIEVVIKSEPQDYLEERDKKTSNNEENINKVLNSAATIEIKVSNKNNDLNIKEEPLCNDIKDMSLTLKDIRKIYHIDVNVSANTASDLNIDQKINIDGDSENNWELLSNVFENFNEVTADSGEEYENDLIILEPKEDVLVVDSDSSSSSDSTSTRRDETSRRCRIYQCQKCSFRGVYKEFTKHKREDCLSRESYPLMQSQTFTCTPCNTKYKTFKRYLKHFKHHGYPKHACPQCSAISDKSDNNDRHVSCHIRAMFVSYRSIQSKESCSKFSFRCKLCDVNVDRTDFFEHWEKHLVIKNWSSSTVVNHKKHVGPYVKKVIELLLNPDKMNRAMLRSYRACVVCDRKFNRKNDCVRHLIEHLLVDALRNKDKYSGLRCQICDEEFHKIDRYRHHLRFHASLPVYKCELCDKSFSDSSNFSKHKKVHNMKIVVCDICQRKFHNKDCLIKHIQEHEGPQQCPECERCFFSEASLRKHQRATHDKHALRYSCRQCDLRFVALKHKWDHMWQVHKERPVQADCAICGAGFRKMRDLKLHVENVHSLKQPNQIDIKIENEEVESTVRND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -