Ehec016297.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010005620.1:2577553-2580256[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.1e-05 0.006 17.4 1.6 2 23 122 144 121 144 0.95 2 10 9e-05 0.0067 17.3 3.4 1 23 173 196 173 196 0.97 3 10 0.00014 0.011 16.6 1.9 1 23 202 224 202 224 0.98 4 10 1.2 90 4.3 0.2 2 21 224 243 223 244 0.91 5 10 0.033 2.5 9.2 1.9 1 21 252 272 252 274 0.91 6 10 0.22 16 6.6 2.2 1 23 279 302 279 302 0.96 7 10 0.13 9.7 7.3 0.1 1 21 322 342 322 343 0.93 8 10 0.43 32 5.7 1.3 1 20 359 378 359 381 0.90 9 10 0.0017 0.13 13.3 6.8 1 23 465 488 465 488 0.96 10 10 0.76 56 4.9 0.8 2 20 495 513 494 515 0.91
Sequence Information
- Coding Sequence
- ATGTCGACTCAGTGCAATGAAGACCTCACAGTTGCTCATGCAGAAAACGCGATTGCGAAAGAGAGTTCTGGCGCCAACAGCTCTTATGATGAAATTATCACGTCTGAAGATGAATTCATGGGCTTCGAAAAGATTCCTAGAGTTTCCGTAGAACGCTTCGACATAACCCAGTATTTGGACAATTTAAAACACAAGTTGAGTAATGAGCAACGGAAAAACGACGCGCCAAAAAAACTCGTGCAAAAATCTAAGGTTTGTTCCGTGTTTCTCGTCCGAGATGACTTGGTTAAACTAAAAGACATGTATACACAGAACCTACTATTAAATAGAAAAATTCTTGCCGGAGACCCGGAAATGAAGCTGAAATGTAAGATATGTGAAAAGGCGTATTCTAGCGAGAAAAAACTTCAAAACCACTTAAAAAACAAGCATCTACTAGTCTACAAGCCACACTTTAAGCCTCCCAAACGCGTGTCTTTCTCCGACCACGTAATTATTCATGAAGTTAAAGAATACCATCGATGTAGAAAGTGCCCTAAGATTTTCGAAAACTATACCGCATTAAAAGTGCACATGAAACGTAAACACAAAAAGCGTAAGTGCTACATTTGCAACTATTGTTCCAAGAAGTTTGTCGATCGTATGTTTTTCAAAGTCCATATCAAGTTGCACTGTGATGTTTGCGGTCAAATATCGCTTAACAAACGGCAACTGTTGGAACATAGACGTAATGTGTGCAATGTAGTAAAAAAGTACACTTGCAAAACATGCGAGGAGACATATTATAGGTTCATGGACCTAAGAGACCATAGCTATGACCATTTGGGTACATTTTATATATGCGACATTTGTAAGGACCCATTTCAGACCAAATGTGAGGTTGCTCATCACATTAAGTACCTGCATTCGAAAAGAAGGCCAAAAAATCTATTTTCTATCGTTGATTTGGGCTCGGAGAAGATGTATGAATGCAGATTTTGCGGCTTAAGCTCGGAAGATAGAGAATCGATCGAAAAGCATGTATCGACGCTTCCAGACTTAACTAATAAGACTACAACTGGTTACAAAGATTACTACTTCTGCGACCAGTGCCTAAAAAAGTTTGCAAAAGAAACAGACATGCTACAACATAAATGGACGCATTACTTAAAGTCAAATGTCCAGTTGCAAAATCGTCCCATGCCAAAGTCGAAAAAACTACAAACATTTAATGCTAATGGTAGTATTCCAGAGTATATGCAGCCGAAATTGATGCTTGAAAGGATAAAAGTTGGCGGAAAGGTTGTCAGTGAACCGTTGAAATTTGTTAAGGTTCAAAGTTTTGATTCGGCAAACGGAGAAATCAAAAAACCTGTTATTGATCCCTATTCGAAAAAGACTATCATATCAAAGCATCAGTGTTCGATGTGCTATAAGTATTTCTCAACAAACTACTGTCTGACCCGGCACAAAGCGACCGTACATGCCAAAACTCAAGACCTCCAATGCCGAGTGTGTGAACAGACATTTGGTTGGCCATCTCTCCTCAACACCCATAAGTGTTTCGGAACAAATACACAGGGAATGCCTTTTAATGGCTCTCAACCAGAAATTCACTGTGACAGTGATCTATCCAATAACTACCTAGATGATTATAACATTGAAGATAATTATTTAAACTCTGTGGACTTTGAAATACCAGCACCTATAGTGGAATTGACTGAGTTTGAAGATTATAATATTATAATAACAGACGGGGACCGTTCCAACACAAAGATAGGTTATAATCCATTGCCGCACTATAAAATTGTGATGCAAGAAGTTCCCATAGAGTTTTAA
- Protein Sequence
- MSTQCNEDLTVAHAENAIAKESSGANSSYDEIITSEDEFMGFEKIPRVSVERFDITQYLDNLKHKLSNEQRKNDAPKKLVQKSKVCSVFLVRDDLVKLKDMYTQNLLLNRKILAGDPEMKLKCKICEKAYSSEKKLQNHLKNKHLLVYKPHFKPPKRVSFSDHVIIHEVKEYHRCRKCPKIFENYTALKVHMKRKHKKRKCYICNYCSKKFVDRMFFKVHIKLHCDVCGQISLNKRQLLEHRRNVCNVVKKYTCKTCEETYYRFMDLRDHSYDHLGTFYICDICKDPFQTKCEVAHHIKYLHSKRRPKNLFSIVDLGSEKMYECRFCGLSSEDRESIEKHVSTLPDLTNKTTTGYKDYYFCDQCLKKFAKETDMLQHKWTHYLKSNVQLQNRPMPKSKKLQTFNANGSIPEYMQPKLMLERIKVGGKVVSEPLKFVKVQSFDSANGEIKKPVIDPYSKKTIISKHQCSMCYKYFSTNYCLTRHKATVHAKTQDLQCRVCEQTFGWPSLLNTHKCFGTNTQGMPFNGSQPEIHCDSDLSNNYLDDYNIEDNYLNSVDFEIPAPIVELTEFEDYNIIITDGDRSNTKIGYNPLPHYKIVMQEVPIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00711349;
- 90% Identity
- iTF_00711349;
- 80% Identity
- -