Ehec009660.3
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010006970.1:349679-371531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 10 7.4e+02 1.4 0.0 7 23 467 484 467 484 0.88 2 12 0.04 2.9 9.0 3.1 1 21 609 629 609 630 0.94 3 12 0.028 2.1 9.4 3.8 2 23 686 707 685 707 0.95 4 12 2.5 1.8e+02 3.3 3.9 1 23 718 741 718 741 0.91 5 12 0.00021 0.016 16.1 0.4 2 23 748 771 747 771 0.95 6 12 0.055 4.1 8.5 0.2 1 23 777 799 777 799 0.93 7 12 0.0017 0.13 13.3 3.3 1 23 805 827 805 827 0.98 8 12 9.7 7.1e+02 1.5 0.2 2 20 838 856 837 858 0.89 9 12 0.07 5.2 8.2 0.1 1 23 933 955 933 955 0.97 10 12 1.2 86 4.3 6.3 1 23 962 984 962 984 0.95 11 12 0.0011 0.081 13.9 1.8 1 23 1016 1039 1016 1039 0.95 12 12 0.0031 0.23 12.4 0.7 1 23 1046 1069 1046 1069 0.97
Sequence Information
- Coding Sequence
- ATGGCTGACCCACCACCTTTAGTGCTATGTATGGACAATATCAACGGGGATGAAGTAACATTAAAAATTGAACCTCACGATGACTTCCGACTGTTTATGGATAAGGCTAAATCGATGTTAGGCTTCGAAATCGACATAAACTCCATAACTGGAAACCAGCCTGTCTCCTTAGACGATAACATTTACCAATTCCTAATAAACACCGAACAAAACATGACCAGCACCTCCATATCCCAACTAGATGCTCTAGACTCCAATACCAACGACGATTTAGTTTACCTACTTGACGACGGCACACAAATAAGAGCTTCTCAGATCCAATTTGATAATGATGACCCTTTAATTGACCTCACGTCGGAGAAAATTCCCTTCGTCAAATATACGGATGGGCCTGATGACCATTACGATGTCAACAGCGATGCTACAAGCATCAAAGACGTCAACATCGAAAGCCCCGTCTCCCGATGGTCAAGCAAAAACTCCAGCCCTAAAAGCTTTGTCAACAGCCTTCCTTTTAAATTAGTTTGCAACAACACCTCCAATTTCGAAGCTCAATTCACGAAATACCTAGAATCTAGCGCCAAAACTTACACCACATTGAACACGGTTAATAAAAACGTGTCCCCAACAAGCATAATTAAAGATAACTTCAAAACTTACGAAGACAATTATCAGAAAAATTCGCCGGTTACGTCTTTGCCGTACGATAAAAATGTTACCGATAAACGTAGGCATGTCAGGAAAACAGATCCTACTAGGATAGTGCATAAGAATTGGTATAAGACAAGCTTAGACTCCGGGCACAATCAGGACTGTTGCATATGTGGGAGAACAGTCGAGAACAATCTAGAAAAAATGTATTTGTTCGATAATGAAGACCAGCGGATACATAGGTGTTCGCCGCAGAAAAGAATGTCGATGCAATTAAAGATAATTTGTGAACAATGTCTGACGGATAATTTCAAGCTATGTCTTACAAAGAGCCCGAATGAAGCCTTGAACAGCGACGAATATTTGCTTATAAAAAATAATCAGCAGTATATCTTTCAAAATGTGACGGATATAGATTTGAAGAGGAAATGCTTCGATCGGTCCAAAGACAAGCCAGAAGCGGAAGTTGTGCCAGAGAGTTCCAGTGACGTGGAGATCATAGAGCCGGAGATGGAGATAGACAAAGTCATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAGAAGTTTTTGGGGACGTATCAGTCGGGTGTTGTGGAATTGAAATGTCGAAACGGCTGGACCGATTTAGGTGAAATTTGGTATGTAGACTATGTGGTAATGTGTAGACTATTGATACCTTGGATTAACAGACGAGTTAATCCAGGGTATCACCTACTTACTTACATACGATTCATTATATCCCGGGGCACAGGATATACAAATTCAAAATGGCTGAAAGGTCATATAAAGGCAGCTCACGATAAACCGGAAAAGTCTGACGATGGTGATAATAAGGAGGTTACAGATGAAAATTCGGCTACAACGGAATCGCCGGTCGCCAATAGAACTCGCAGTAGTATGAAGAAAGAAGATTGCGAAACAGATGTTAACGAGGAAATAAAGTCAACCGCAGAAAATATTCCGATCGGTGGTATCACCTACGACAACATATTTAAAATTCTAAAGGTACCAACGGTGAAATTGGAAACTGAAGTGAAGCAAGAAGCCCTGGACAGCGATGATGATGAAATATGGATAGTTCACACCGGTGATGAGATACAGGAGAAGCAGCTACAGAACCTGCTCAAACTTAATGATGATAACGAGAGTACACAAAACGCTTTGACTAAACACAAGTGCTTTAATTGCAGTCGCATCTTTCCCTCCGCGGAGAGTTTGAATACTCACAAGTGCAGGAAACGCGGGAGAAAGAGAAAGTCTCCGACGGGACCAGCTGATTTGCTTACATCAAATAAAGAAGACATTTTGAAGAAAGCTCAAAATAAAACGAAACAAACCAACAATGACAGTTTATTGAAAGTTCGCAAGAAGAGAAATCGCGACGACAGTCCACAAATAGTCACCTGCCACAATTGCAACGAGTCCTTCACGTCTAAAGTACGGCTTAAATTCCATATGCAGTTCCACACTTCCTCCTCCCTCCTGCAAGACGGCGCGTACTGCTGCTCGTCGTGCAGCACGCGCTTCGGCAGCGAGGCGGAGCTGTTCGACCACGTGCACTTCCGGCACACGCGCGCGCGCCGCTGGCCCTGCCCCGCGCCCGGCTGCGGGAAGACCTTCCACCTGAGAGCTACGCTAACGAAGCACAGTCGCACGCACACAGACACGCGGCGCTACGTGTGCGTGACGTGCGGCAAGCGCTTCCTCGACAAGCAGACGCTCGACGAGCACGGCGTCACGCACTTGCAGATCAAGCCGTTCCAATGCCACATCTGCCTGAAGCAGCTCACGCGGCGGTCTCGCCTGAGGATGCACCTGCGAGCTCATGAGGAGGAGCTCTGCCCCAAGCTGGTGCTGGTCTGTGCCGTGTGCTGCCGGGCCTTCAGGGATCCTCAGCAGGCTCAGGAGCATGTCACAAAATCGGCGGAATGTTTGGACGCGTTCGCTCGCGAGCTGAAGCAGGACGAGACCGACGAGCAACTGTCGCCCACCAGCGGGCTCGTCACTCATAACGTGAAAAAAGAATCACCGCTATCTAAACCAATACCACGAGAAGTATCGTCGGAAGAGAGTCAAGCTCTGTTGAGCGCAGTGGACGCGGCAGCAGCCAGCATCGTGCGGGTCGTGCGGGTCGAGAAGGCGTTCCGATGCGAGTACTGCGAGGATGTGTTCTATTTGGAAGAAGCTCTCAATTCGCACAGGGCGATACACAAAGGCATCAAGAATCCATTCGTTTGTCACATTTGCAAAGTCAGCTTCGCAACGTATTCCAGATGTACAACACACAAAACGACGCACGGTTTTTACAAGCGCAATTTGACCGACGGCAAAAAGGAGGATGCGAGTAGTACTGGGATACTCGGGTATGGGGGGTTCCCCGTTGTCAAACACTTTTTGTGTGAGGATTGCGGCCGTTCCTACCTCCATTGGACATATTTACAAGTACATCGGCGAATGAAACATTGGAATGAAAAATTTCTGTTCAAATGTAACCAGTGCGAACTGACCTTTCCGAATAGttggagcgtggcctATCACCGTAAGAAGGTACATGGCAAGTCCGGGCAGGAAGATGGCGGTATCACCAAGATAGCGAGACAGGATTACTGCAGGTGTTGCCAGCTTATTATATAG
- Protein Sequence
- MADPPPLVLCMDNINGDEVTLKIEPHDDFRLFMDKAKSMLGFEIDINSITGNQPVSLDDNIYQFLINTEQNMTSTSISQLDALDSNTNDDLVYLLDDGTQIRASQIQFDNDDPLIDLTSEKIPFVKYTDGPDDHYDVNSDATSIKDVNIESPVSRWSSKNSSPKSFVNSLPFKLVCNNTSNFEAQFTKYLESSAKTYTTLNTVNKNVSPTSIIKDNFKTYEDNYQKNSPVTSLPYDKNVTDKRRHVRKTDPTRIVHKNWYKTSLDSGHNQDCCICGRTVENNLEKMYLFDNEDQRIHRCSPQKRMSMQLKIICEQCLTDNFKLCLTKSPNEALNSDEYLLIKNNQQYIFQNVTDIDLKRKCFDRSKDKPEAEVVPESSSDVEIIEPEMEIDKVIDNLEEADEEVKKFLGTYQSGVVELKCRNGWTDLGEIWYVDYVVMCRLLIPWINRRVNPGYHLLTYIRFIISRGTGYTNSKWLKGHIKAAHDKPEKSDDGDNKEVTDENSATTESPVANRTRSSMKKEDCETDVNEEIKSTAENIPIGGITYDNIFKILKVPTVKLETEVKQEALDSDDDEIWIVHTGDEIQEKQLQNLLKLNDDNESTQNALTKHKCFNCSRIFPSAESLNTHKCRKRGRKRKSPTGPADLLTSNKEDILKKAQNKTKQTNNDSLLKVRKKRNRDDSPQIVTCHNCNESFTSKVRLKFHMQFHTSSSLLQDGAYCCSSCSTRFGSEAELFDHVHFRHTRARRWPCPAPGCGKTFHLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELCPKLVLVCAVCCRAFRDPQQAQEHVTKSAECLDAFARELKQDETDEQLSPTSGLVTHNVKKESPLSKPIPREVSSEESQALLSAVDAAAASIVRVVRVEKAFRCEYCEDVFYLEEALNSHRAIHKGIKNPFVCHICKVSFATYSRCTTHKTTHGFYKRNLTDGKKEDASSTGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHWNEKFLFKCNQCELTFPNSWSVAYHRKKVHGKSGQEDGGITKIARQDYCRCCQLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -