Ehec016102.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- Msh6
- Assembly
- GCA_026213755.1
- Location
- JADANM010005620.1:444267-473064[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.4e-06 0.00018 22.2 1.5 1 23 660 683 660 683 0.95 2 12 0.0013 0.097 13.6 0.1 3 23 690 711 688 711 0.95 3 12 0.00025 0.019 15.9 0.2 2 23 720 742 720 742 0.96 4 12 1.3e-06 9.3e-05 23.1 1.4 2 23 751 773 750 773 0.95 5 12 5.1e-06 0.00037 21.2 0.9 2 23 781 803 781 803 0.97 6 12 0.00042 0.031 15.2 3.2 3 23 813 834 812 834 0.95 7 12 0.0068 0.5 11.4 2.9 1 23 840 863 840 863 0.95 8 12 0.0027 0.2 12.6 0.6 2 23 871 893 870 893 0.95 9 12 0.0044 0.33 12.0 2.7 3 23 911 932 909 932 0.96 10 12 0.00053 0.039 14.9 0.4 1 23 958 981 958 981 0.96 11 12 0.022 1.6 9.8 1.9 1 23 1017 1040 1017 1040 0.96 12 12 0.0031 0.23 12.5 2.1 1 23 1063 1086 1063 1086 0.96
Sequence Information
- Coding Sequence
- ATGTGGCTTATCCTGCAGATACTCTTAAAAATATCTACGGTTATTCAGCTATCCAATGAGGAAAGTAACGGTTGCAGTACATATGGAGTGTGTTTTGTGGACACCTCAATTGGTCAGTTTCATCTTGGACAATTCAAAGATGACAAACATTCGTCAAGGCTGCTTACAACACTGGCACACTTCCCTCCAGCATTAATCGTGTACGACCGTAAATCGTGTACACAACGAACAAGCAAGTTGATATCCACGCACTGCCACAGCGCAAGGCGAGAGGCACAGAGTATGCCGACTCCAGAGAAAACATTGAAATTGCTTGCTGAGAAATATTATAAGACAGATGATAATGGTGATTGGCCGGATGGACTCAAACAGTTTTTGTATGAAGGTGATGCACTCGGCCTTACACCAGCAAGCAATAGTTTTTTGGCAATCAAGGCGCTAGGTGGCTGCGTTACGTTTCTCACAGATTGCCTGCTTGATATACAAATATTAGAAATGGCGCAGTATTCAGAATACACGCCTGCTGATGTTCTGAATACAACTATATGTGATACATCGAGTAGTAAGCAGTGGACAGGCGGGAGTACTATGGTGTTAGATGCTATTACTCTGAGAAACCTGCGAATTGTACAGGATGAGGGTTGCCTGTACGAAAAATTGAATTTTTGCTCCACTGCTATGGGAAAAAGGTTGCTATATCAATGGGTGTGTTCGCCAAGCAGTGACTTAACGGTTATCAAAGAGCGACAGGAAGCAATCAAATCACTGTTTGAAAATCAGGATGTATGTCAGGAAGTGAAGAGTGTACTCACTACATTACCTGACTTGGAGAGACTATTGGCTAAAGTCCATGCATTGGGAAATTTCAAAAAGTCAAAACAGCATCCGGATTCTCGCGCCATTTTGTATGAAGAGAAGACATATTCGAAACGGAAAGTTCTAGACTTCATTTCAGTGCTCAACGGGTTTACAGCAGCGCTAAAGTTACAAGATTTGTTCTCTGATGTTGATTCTGTACTGTTGAAGAGATTAACACAGTTCAGTCCGGCTGGGAAGTTTCCGGATTATAGAGATACGTTGAAGTTCTTTAAGGAGGCATTCAACCAAACCCAAGCTGAGAAAGAAGGTATAATTCTCCCGGGCGCAGGAGTAGACCAGGAATATGACAACACACTGTTATTGATACAACAAATTGAAGATGAGTTAAAGGAATATCTCACCGAACAGGAAAAACATTTTAAATGTCGCTTACAATATGTAGGGACAGACAAGAAACGTTACCAAATAGAGGTCCCGCAAAGCGCAGCGTCGAAGGCATCCTCTGACTACCATTTGGAAGGCGCCAGAAAAGGATTTAAAAGATTCTCTACTGATGAAACTAAGGAATTCCTAGCCCGCATGATGGCAGCGGAGGATCAAAAACGCAACGTGCTAAAGGATCTGAGCCGTAGAATATTCGAGAAGTTCTCAACGCACTACAAGCAGTGGTCGGCCGCAGTGCAGTGTGTGTCCGTGCTGGATGTTCTCATGTCGTTGAGTGAATTTACTAGACAACAGACTAGCGATGTGTGCCTGCCTGAGGTTACTTTCGATGAGAGAGAGCCCTACATAAATATAACAGAAGGGCGACACCCCTGCATCCCTATAGTGGAGGATTTCATCCCTAATGACACTACACTTGGTGAAGATGGAACAAGTCTCCTATTGCTAACCGGACCCAACATGGGAGGCAAGTCCACACTCATGAGACAAGTCGGACTGATCACTGTACTAGCGCATTTGGGCAGCTTCATACCAGCCCAGAGTTGTTCACTATCACTCGTGGATCGTATTTTCACGCGTTTGGGCGCAGCTGATGACATTCTATCGGGACAATCCACCTTCCTGCTCGAGATGAACGAAACTGCAGCTATTGTCAAACATGCTACAGTTCATTCACTGGTGCTACTCGATGAATTAGACATGCAGACTCGAGATTTTGTCTGCGATTACTGCAGCCGGTCATTCACCCGGAAATACAACCTCATTACACATATAGAGAACTACCATGTCAACGCAACTTGGTTTTGTGACATCTGTAGCCAGACTTTTGGAAGTCCTTCCGGCTTACAACTCCACTTAAGCCGCGGCCACAACAGACATGGACAGGGATTCCCCGAGTGCGATCTCTGTGGACGTATCTTTACCCGAAAACAGAACATAGTATCCCATATGATATCAGTCCACTTCCAAACGTTACGGACCAGCTCTGTTTGTAATCTGTGCGACAAGACTTTTACATCTCAACGGAATCTGAAAAGGCATTTGAATCAGATACACAACCCAAAAGCACAGTATCCAACGTGCAATTATTGTCAAAAGGTCTTCAAAGGAAAGTCTTCACTCATATCCCATATTCAGACGTTACATGATATAACAGACACGGATTTGAACCACTGCTATCTGTGTGACAAACGGTTTTCGAACACTCGAAATTTGAAACGTCACGTTGAAATGCTGCACGGTGAAAGGGAAGAGTATAAATGTGATATTTGTCCCAAAGTATTCATGTGGCATCATAGCCTGAGACGGCATACTATGGCCAGACATTCGAACAGTCCAGAGCAATTGACGTGCCAGTTTTGCTCGAAAACCTTCTATGGCATAGAGAATTTGAAGAGCCATATATCGGTGTACCATAAACAAGATGTAGAGAAGACCTCGTCCGGCGACTCTGAAGCAAAAGTGCACTGCGAGTATTGCCAGACGTCATTCGATCACGAACCGTCGTTGCGACAACACGTCAAACGCGATCACACGTTTGAAATGTTCTACGATTATTGCAAGAAATCGCTTTTAAAATCGTTGACTCAAAGCGAGGGTAGACAGAAATATACGTGTGATATTTGTACTAAAGTTTCAACCACGGTCTACGAACTAAAAGACCATTTGAAAGCTACCCACGATATAGAATACTGTTTATCGACTTGCAATGTCTGTTTCAAACAGTTCTATTGTAAAGATTCAATTGCGGAACACAAAAAGTACTGTCTACCCCCAAAAGGCGTCCACACATGCGCGTATTGCGACAAGCTCTTCACAGACATTTCCAGCTTAGAATTTCACACGCGAATCTTTCATCCTCAAACTCAAATAGCTGATTCAAATATATCGTCCAGTGTCGACGATTCGGAAATAAATTTAACATACAATTGCAGTGTTTGCAGTCGCGTTTATATGAACGAAAGATCTCTAAGACATCACATTAAACTAAACCATTCCTCTGAAGATATCGTGCAGTGTAAGAGGAAATTAGTTAAGTTAGTTTACGGACATTGTGCTAGTGTTGCAAGCATGAAAATACCAGAGACGGGCAATGTTGGAGCGTACTACGGCAATGAGGAGAACGGTCAGTGGCAGCCAAATGGAGTGATCATAGACAACGGTGTAGGAGGCGGAGTGGTTGGCAGCGGCGACGCCGGCGTGCACAGGCCGCCGGTCTACCCCGTGCATATGCCGAGAGGGCCCATGCCAGAGAGGAAATTAGTTAAGTTAGTTTACGGACATTGTGCTAGTGTTGCAAGCATGAAAATACCAGAGACGGGCAATGTTGGAGCGTACTACGGCAATGAGGAGAACGGTCAGTGGCAGCCAAATGGAGTGATCATAGACAACGGTGTTGGAGGCGGAGTGGTTGGCAGCGGCGACGCCGGCGTGCACAGGCCGCCGGTGTACCCCGTGCATATGCCAAGAGGACCCATGCCAGCAGGATACGTGATGGCAGGGACATACTACCACCAGCCGCCTTACCCGCCCGTGGCGGCGCCACAGGATGACTTCGCTGATTATATGTGGATGGAGAACGAGGAAGAGTTTGATAAGCAGGTGATGCAGCAGTTGGAGGAGGAGGCTTTAATGGAACAGTGCATAGAAGCGATGTTGGAGGACGAACAGAGGGAACGGCACAGGCCCGTCTCCAACGGACACAATCACTTTGCCACAACTAGCAACGGCTCAAATTCAGTGGCACTGCAGGAAGCTGTCTCCCGGTCAACTCTCAACCCACTCGCAGCTGAGTTTGTGCCCAGCAGAGCTCGGCAGCCACCAGAAGAAAGACAGCATCCTCCGGAAGCAAAAGAGGAGACAGAAGCAACAAAGGAACAGATAGAACCAGCGAGGGAAGACATCCAGGAGAAGGAAGTGTCTAATGATAAAGAAGCTTCACCACAAACGGAACCACCGGAAGTGAGCGCAGCAGACGTCCAACCGATAGACACACAGACAGACGAGAAAAGCAAAGAGAAAACAAAACCGAAACCGGATGCAAAGAAAACCAAACCGGAACCAGCGAAGGCAAAAGCGAAAAAGGACAGCAACAAAGTGAAAAATGTACCAAGTGAGTTGAAAAGTGTGCAAAGTGAAGTGAAAAGTGTCAAGGGCGAGTTGAAAAGTGTGCAAAGTGAAGTGAAAAGTGTCAAGAGTGAGGTGAAGAGTGTCGCCAGTGTCGACGCGACCTGTGTCAAGAGCGAGGATGAGAAGGAAGATAGTGATATTTCAAAGCAATCATCGCCCCCACCGTCTGAAGATTTCGGTATTAAACCCATCAACTATGCTGCAGCGGCTAAAGCGAATAAACCCAAAAAGTCAACCACACCACCCATTACAGAAACCAAAACCGCACCCATCAAAACCGAGAAACCCAAGGAGAAGAAAGCGGTGAGCAACCAACCAAAAACCAAGGCAGAGAAACCAATGGTACAAAGGAAGAACTCGACCAAATAG
- Protein Sequence
- MWLILQILLKISTVIQLSNEESNGCSTYGVCFVDTSIGQFHLGQFKDDKHSSRLLTTLAHFPPALIVYDRKSCTQRTSKLISTHCHSARREAQSMPTPEKTLKLLAEKYYKTDDNGDWPDGLKQFLYEGDALGLTPASNSFLAIKALGGCVTFLTDCLLDIQILEMAQYSEYTPADVLNTTICDTSSSKQWTGGSTMVLDAITLRNLRIVQDEGCLYEKLNFCSTAMGKRLLYQWVCSPSSDLTVIKERQEAIKSLFENQDVCQEVKSVLTTLPDLERLLAKVHALGNFKKSKQHPDSRAILYEEKTYSKRKVLDFISVLNGFTAALKLQDLFSDVDSVLLKRLTQFSPAGKFPDYRDTLKFFKEAFNQTQAEKEGIILPGAGVDQEYDNTLLLIQQIEDELKEYLTEQEKHFKCRLQYVGTDKKRYQIEVPQSAASKASSDYHLEGARKGFKRFSTDETKEFLARMMAAEDQKRNVLKDLSRRIFEKFSTHYKQWSAAVQCVSVLDVLMSLSEFTRQQTSDVCLPEVTFDEREPYINITEGRHPCIPIVEDFIPNDTTLGEDGTSLLLLTGPNMGGKSTLMRQVGLITVLAHLGSFIPAQSCSLSLVDRIFTRLGAADDILSGQSTFLLEMNETAAIVKHATVHSLVLLDELDMQTRDFVCDYCSRSFTRKYNLITHIENYHVNATWFCDICSQTFGSPSGLQLHLSRGHNRHGQGFPECDLCGRIFTRKQNIVSHMISVHFQTLRTSSVCNLCDKTFTSQRNLKRHLNQIHNPKAQYPTCNYCQKVFKGKSSLISHIQTLHDITDTDLNHCYLCDKRFSNTRNLKRHVEMLHGEREEYKCDICPKVFMWHHSLRRHTMARHSNSPEQLTCQFCSKTFYGIENLKSHISVYHKQDVEKTSSGDSEAKVHCEYCQTSFDHEPSLRQHVKRDHTFEMFYDYCKKSLLKSLTQSEGRQKYTCDICTKVSTTVYELKDHLKATHDIEYCLSTCNVCFKQFYCKDSIAEHKKYCLPPKGVHTCAYCDKLFTDISSLEFHTRIFHPQTQIADSNISSSVDDSEINLTYNCSVCSRVYMNERSLRHHIKLNHSSEDIVQCKRKLVKLVYGHCASVASMKIPETGNVGAYYGNEENGQWQPNGVIIDNGVGGGVVGSGDAGVHRPPVYPVHMPRGPMPERKLVKLVYGHCASVASMKIPETGNVGAYYGNEENGQWQPNGVIIDNGVGGGVVGSGDAGVHRPPVYPVHMPRGPMPAGYVMAGTYYHQPPYPPVAAPQDDFADYMWMENEEEFDKQVMQQLEEEALMEQCIEAMLEDEQRERHRPVSNGHNHFATTSNGSNSVALQEAVSRSTLNPLAAEFVPSRARQPPEERQHPPEAKEETEATKEQIEPAREDIQEKEVSNDKEASPQTEPPEVSAADVQPIDTQTDEKSKEKTKPKPDAKKTKPEPAKAKAKKDSNKVKNVPSELKSVQSEVKSVKGELKSVQSEVKSVKSEVKSVASVDATCVKSEDEKEDSDISKQSSPPPSEDFGIKPINYAAAAKANKPKKSTTPPITETKTAPIKTEKPKEKKAVSNQPKTKAEKPMVQRKNSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -