Ehec003179.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010006871.1:2913646-2916838[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.6 6.4e+02 1.6 0.3 1 23 34 56 34 56 0.84 2 18 0.023 1.7 9.7 0.1 3 23 81 102 79 102 0.92 3 18 0.011 0.84 10.7 1.7 2 23 125 146 124 146 0.96 4 18 0.0055 0.41 11.7 4.6 3 23 152 172 151 172 0.97 5 18 0.21 16 6.7 0.6 2 13 178 189 177 191 0.84 6 18 5.5 4.1e+02 2.2 0.4 1 23 242 265 242 265 0.92 7 18 0.084 6.2 7.9 0.1 3 23 288 308 286 308 0.96 8 18 0.00012 0.0087 16.9 0.5 2 23 331 352 331 352 0.96 9 18 9e-05 0.0066 17.3 0.7 3 23 356 376 355 376 0.97 10 18 0.00072 0.053 14.4 1.5 2 23 483 504 482 504 0.96 11 18 0.21 15 6.7 6.7 1 23 526 548 526 548 0.95 12 18 0.0041 0.3 12.1 0.8 1 23 552 574 552 574 0.97 13 18 0.0016 0.12 13.4 0.2 1 23 579 602 579 602 0.95 14 18 5.6e-05 0.0042 17.9 1.0 1 23 608 631 608 631 0.98 15 18 0.0055 0.41 11.7 0.9 1 23 638 661 638 661 0.97 16 18 0.0066 0.49 11.4 1.3 1 23 667 689 667 689 0.94 17 18 8.4e-07 6.2e-05 23.7 1.0 1 23 695 717 695 717 0.99 18 18 1.7e-06 0.00012 22.7 2.6 1 23 723 745 723 746 0.96
Sequence Information
- Coding Sequence
- ATGTGGAAACAGAGACGCAAGTTTAACGATCAAAGAGACAACGCGGCTGTCGTAATAGAGTTTTCTAGCGCTTGTCCATTTCGATGGAGACGGGGCCGTTATTCATGCGCCTTTTGCTCCAGCTCTTTCGCAGACTTTGAAGGAGTGTTAGAACATAGTACGCAACATTCTAACCGAGTTGATGCCTTAAAACACGCCCGTACCTTTGATTACATTAAAGTCGAAATAACAAATCTAGCCTGTACTATATGTAACGAAAAAATGACGGACCTAGAAAATCTAAAAGACCACCTTCTAGCTGTTCATAAGAAACCAATTATAAAAGATTTAGGATTAGGTGTTACGCCGTTCTTGTTACGGAATAGGGAACTGGTTTGCGCCCATTGCGGAGAGAGATTTCTGCAATTTACTAAGCTAAACACTCACATGAACCAACATTATCCAAATAATATATGCTGTCACTGTGGCAAGGCATTCTCGGCAGCACACAGATTAAAGTCACATCAGCTAATCCACGAAACTGACAACAATAAATGTACGAAATGTGATAAGGTTTTTGAGGGGCAAGAGAATCCGGAAGCAAGCGTACCTGACAACATTGGATTAAATAATGGTAAGGAAAAGAAAGCAAGGGCAGATAGCCGTTGGTCTATTTTCCGAAAAAACGTACAGGTAGTCTTGAGTTCGTGCACAGCGTATCCATTTAAGTACCGAAAGGGAACATTTATATGTTACTACTGTACGGACATGTTTTTTGAGCCAAATGAAATAAGGGAGCATACGCTGAGAGTGCATCCAGATATACAGTGGAAGCCGCCTAAGATAAATAGTCTTCTAAGAATGGATTTCGCTTCGATAAATTGCAAGTTCTGTGGTCAATATATTAACGGTTATGAAGAATTAAAGGCTCATTTAGCCACACACGGAAAGGAGATAGACTGTTCGCAAGGGGAGACTATTTTGCCCTATAAATTAAGAGAAAATGAGAACGTCTGCCAGATTTGTGGCAAACGCTATGAGTTCTTCAGTGAACTGTATAAGCATATGAATGACCATAGTAACATATGTCGCGTATGTTACAAAAGCTTCGCGAATAGTGGGTTCCTGTTGTCACATATGAAAACTCACGATAAAGGAACAGCTGAAATAAAAATAAAAGAGGAGGCGGTACCTGAATATAGTGCAGTAACTACTAATGATGAGATCATAGAACGGCGGTTAGAAGGGAATGCACGTCGGGCTATTTTCCGAAAGAATATCGGAGTTATTATGAGTTCGtgcaccgcttacccttttaagtacagaaaggggacgtacctctgcttcttttgtaaaagcatgttcctagaaccggaAAAAATGCGAGAACACACACACAAAATGCACTCAGACATACTTTTAAAGCCGAGAAAGTATGAACCTCTCAAAATGGATTTTGCCGTCACAGTTTGTAAATTTTGCGGAAAACATATTAGGGATTATGCGGAATTGAAAACGCATTTACGAGAGCACGGAAAGTCAATAGACTGTTCGCACGGAGAAAGCAttttgccatacaaattaagcaaagatgagcattgctgccaagtctgtggaaagcggtacgaaatgttcttaagcctccacaagcatatgaacgatcattacgagcattttatatgcgagacgtgtggaaaaggattcgcaactacccaacggatgttgaatcattcgaaaactcacgaaaaaggcgattttccatgcaagcactgcggagagacgctcccgtcgtacgcttccctttacgcccatgtagctaaagttcacaaatctaataaaagatacaaatgccctatatgcgatgagaagttcgcttcctacaagtataggatgaaacatttgaacactattcacggggagaagacagctctgttcccatgtccgtcttgtcctaaagttttcgatctctgtagtcgtagaacggctcatattcgctcccaacatttgcaagaacgaaaccacgcttgtggctcgtgtgggatgaagttctttaccaactacgagttacaagaacacagtattaaacacgtaggagctaggatataccagtgcgatgtttgcaaaaagtcatacgctcggctaaagactttgagagaacatatgcgtatccatactaatgataggcggtttgtttgtcccgtttgtggacaatcgttcatacaaaaatgtagcttaaagcagcacgttagggttcatcatccCATGCAGGTTAAAGACTCCTTTTAA
- Protein Sequence
- MWKQRRKFNDQRDNAAVVIEFSSACPFRWRRGRYSCAFCSSSFADFEGVLEHSTQHSNRVDALKHARTFDYIKVEITNLACTICNEKMTDLENLKDHLLAVHKKPIIKDLGLGVTPFLLRNRELVCAHCGERFLQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKSHQLIHETDNNKCTKCDKVFEGQENPEASVPDNIGLNNGKEKKARADSRWSIFRKNVQVVLSSCTAYPFKYRKGTFICYYCTDMFFEPNEIREHTLRVHPDIQWKPPKINSLLRMDFASINCKFCGQYINGYEELKAHLATHGKEIDCSQGETILPYKLRENENVCQICGKRYEFFSELYKHMNDHSNICRVCYKSFANSGFLLSHMKTHDKGTAEIKIKEEAVPEYSAVTTNDEIIERRLEGNARRAIFRKNIGVIMSSCTAYPFKYRKGTYLCFFCKSMFLEPEKMREHTHKMHSDILLKPRKYEPLKMDFAVTVCKFCGKHIRDYAELKTHLREHGKSIDCSHGESILPYKLSKDEHCCQVCGKRYEMFLSLHKHMNDHYEHFICETCGKGFATTQRMLNHSKTHEKGDFPCKHCGETLPSYASLYAHVAKVHKSNKRYKCPICDEKFASYKYRMKHLNTIHGEKTALFPCPSCPKVFDLCSRRTAHIRSQHLQERNHACGSCGMKFFTNYELQEHSIKHVGARIYQCDVCKKSYARLKTLREHMRIHTNDRRFVCPVCGQSFIQKCSLKQHVRVHHPMQVKDSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -