Ehec000463.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- gus
- Assembly
- GCA_026213755.1
- Location
- JADANM010005346.1:5685061-5697741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 11 7.2 0.8 1 20 6 26 6 28 0.90 2 13 0.33 25 6.0 0.0 2 21 34 53 33 54 0.93 3 13 0.69 51 5.0 0.2 1 12 203 214 203 223 0.90 4 13 5.1e-06 0.00037 21.2 1.2 1 23 372 394 372 394 0.98 5 13 0.00037 0.027 15.3 0.1 1 23 401 423 401 423 0.97 6 13 0.00017 0.013 16.4 2.4 1 23 438 460 438 460 0.98 7 13 2.1e-06 0.00015 22.4 0.5 3 23 510 530 508 530 0.97 8 13 0.0084 0.62 11.1 4.5 1 23 546 568 546 568 0.98 9 13 1.9e-06 0.00014 22.5 4.5 1 23 574 596 574 596 0.98 10 13 0.0012 0.091 13.7 5.0 1 23 602 624 602 624 0.98 11 13 1.2e-05 0.00089 20.0 0.4 1 23 630 652 630 652 0.98 12 13 0.00033 0.024 15.5 0.1 1 23 656 678 656 678 0.98 13 13 0.00013 0.0092 16.8 0.1 1 23 686 709 686 709 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACGAAACATATTCATGTCCATTTTGTTGCAATGAAAAATTTAGTTCTAAGGAATTACTAGTAGATCACCTAGCTAAAATTTCTGAGATTTTAGTATGTCCTATATGTAAGAGTAACATTTCATCATTGGATAGTCTTATATCTCATTTAAAATACGATAATTGTACAGAAACTATTATAATTTGTAAATATTCTGAAAATGAAAAGATACTTGGCAAGGCAGACCAAAATGAAATTCACTATGAATTTGCAGATAACATACAGGAAAATAATGATAATATAGATAGAAAACCTGAAGATATTTCAGAAGTCAGTAATATCTATTCAGAATTTTTAAATAAGCAGTTCCTAAATAATCAAGAAATTAAACTTGTGAAGGACAGTGGAAATAGATACTTGCTTGTTACAAGTAGTAATGATTCAATTAGTGAAAATGCTACCCTCGTTTCTAAGCAAAACAATGATGGAACCATTTCCTTTAGTATTGAAAGCACAAATGAAGACACTGAAAGTCCAGTTGTAGTTGAAAGTAATATAGAAGAGAAGGTTGAAGAACAGAGTCAGGAGAACTATTCAAAAGTGGAAGTCCAAGAAGAGATGTACACTTGCAACGCTTGCGGTATTTCATTTACCTCTGTAATGGACCACATACAGAACTATCACAATGATCAAGATGTTGTTGTTGAGGAACCACTAGATGATGATAACAATGGTACAATATCAATGGAGTATCAGCATATTTCAGAAGAGGATCCCAATGCTGAGAAACAAATTCCTCGGCGAATGATAACTGAAACTGGGGATATTGTAGAGGAACCATATGAAGAAACTGAAGAGAATGAACAAGTAAGAGTTATAATACCTGTGAAGAAAGAAGAATCAAAAGCACAAAACACAAGAAAATATGTGCAAGTGGACCAATTCTGCAGCAGCGTTGTGAAGGAGATTAAGCCTGCTGGTGATTCAAATGGTCCAAATCATAAAGTCTTGGTAAAAACAATAGAAGCACCGAATGGAAATAAAGTTCAAGTATATAATTGTATGGCTTGCAATTTTCTTCTATCGTCGCTTGCAGAATTTTTTAATCACCCATGTAAAAAACAACGGTATTCTTGCCCTCATTGCGACGTCGTGTATGATAATCCCAAATCATTGTGCGCTCATATGAAAGTTCATAAAGAAAAACCAGTAACGTTTTCGTGTCCACTATGTTCGGAATCTTTTGATGAACCGAACGCGTTGTGCGCTCACATTAACGAGCATAAAGGGAAATCAGATTCAAATCCCCTGATCGTTCCAGTCAAATTTGAGTGTGAGATATGCAGCACCAAATTTCAAACGAGTAAATCGTTGAAATTACATAAGAGGATGCATTATCCTATTAAGTCCCGACCAATAGAACCTCCCTTGGAAACAACAGAAGGTACGGACAAATATGTTTGTCCGGTGTGCTTGAAGCACATACCCGTAGACTACAGGACGATACATCAGAACTCGCACAAGGCCAGCAACAAGATGATCTGTGATATTTGCAACAAGAAATTCACTAGCAAAGAGTACTTGGAAATGCACATGAATGTACATAATATGGATAAGGTAACCGTTTGCAAGCAAGACAACTCACTGCCGTACCACTGCCTGTACTGCAACAGGAAGTTCGCGAGACCGCACGAGAAAGTTAAACATGAGAGGATCCATACTGGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGCCCCTACCCCTGCCCGCACTGCCCCAAGCGGTTTAAAGCGCACAGCGTGTACAACCATCATCTGTTGACGCATTCTGAAGTGCGCGCCTACAAGTGTCCGTTTTGCCCCAAGGCCTTCAAGACGTCGGTTCAACTCGCCGGGCACAAGAACTCGCACACAAAACCTTTTTCGTGCCAGCAATGTAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGGTGCACTCGCGGCAGAACAACCTCAAGTTCGCGTGCGCGCACTGCGGCGCCTCCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCCGCACCGCGCACGTACTGACAGTTGAAGTTGAGCGTGACGGCGACGAAGGCGGGCGCGTCGGCGCGGTTGTGCAGCTGCAGGTCGATGTTGCGCCGGAACTCGGCGCGCAGCAGCGCCGTGTCGCCAATAATAAAAACACTTTAGGCCAGGCGTGCACAAGGGAGTTTTTCGCCGCGCGGCAGAAAAAGGCAGCGGCAAAATCTCGCACTGTAATTCTGTACCAAATAGTTTCAAATTTTATTGCGCGCACTTATGGCGAACCACCCCTGATTTGCCGTGCGGCGGAAATTCGTAGTGCATGCCTGGCCTTAAAGCTTCAAAACGAACCACTAGATGATGATAACAATGGTACAATATCAATGGAGTATCAGCATATTTCAGAAGAGGATCCCAATGCTGAGAAACAAATTCCTCGGCGAATGATAACTGAAACTGGGGATATTGTAGAGGAACCATATGAAGAAACTGAAGAGAATGAACAAGTAAGAGTTATAATACCTGTGAAGAAAGAAGAATCAAAAGCACAAAACACAAGAAAATATGTGCAAGTGGACCAATTCTGCAGCAGCGTTGTGAAGGAGATTAAGCCTGCTGGTGGCAAGTACAAGAGCGGGGAGCGCTCAGTGAGGGGCGGGGGCGGCGGCGCGGAGGAGGCGCGGCGCGGCGGCCTCAAGGCGCTGCCGAAGCGCGCCCGCACTCGCTGCAGGGGCATGAACATGGGGCAAAAGCTCTCCGGCGGTGTCAAGTCGGTGTCGCGCGATTGCACGGCGCCCTTCAAAGCGGTGGTGGCGCGCGAGCTCGCGCCCGAGCCGCCGCGGCCCGCGCGCCTCGACGCGTTGCTCGACGCGCCGCCCGCGCATCCCGACACGCAGGTCAAGCATGCCTGGAACCCAGATGATAGGTAA
- Protein Sequence
- MEDETYSCPFCCNEKFSSKELLVDHLAKISEILVCPICKSNISSLDSLISHLKYDNCTETIIICKYSENEKILGKADQNEIHYEFADNIQENNDNIDRKPEDISEVSNIYSEFLNKQFLNNQEIKLVKDSGNRYLLVTSSNDSISENATLVSKQNNDGTISFSIESTNEDTESPVVVESNIEEKVEEQSQENYSKVEVQEEMYTCNACGISFTSVMDHIQNYHNDQDVVVEEPLDDDNNGTISMEYQHISEEDPNAEKQIPRRMITETGDIVEEPYEETEENEQVRVIIPVKKEESKAQNTRKYVQVDQFCSSVVKEIKPAGDSNGPNHKVLVKTIEAPNGNKVQVYNCMACNFLLSSLAEFFNHPCKKQRYSCPHCDVVYDNPKSLCAHMKVHKEKPVTFSCPLCSESFDEPNALCAHINEHKGKSDSNPLIVPVKFECEICSTKFQTSKSLKLHKRMHYPIKSRPIEPPLETTEGTDKYVCPVCLKHIPVDYRTIHQNSHKASNKMICDICNKKFTSKEYLEMHMNVHNMDKVTVCKQDNSLPYHCLYCNRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYPCPHCPKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEVHSRQNNLKFACAHCGASYARAFALKDHVRTAHVLTVEVERDGDEGGRVGAVVQLQVDVAPELGAQQRRVANNKNTLGQACTREFFAARQKKAAAKSRTVILYQIVSNFIARTYGEPPLICRAAEIRSACLALKLQNEPLDDDNNGTISMEYQHISEEDPNAEKQIPRRMITETGDIVEEPYEETEENEQVRVIIPVKKEESKAQNTRKYVQVDQFCSSVVKEIKPAGGKYKSGERSVRGGGGGAEEARRGGLKALPKRARTRCRGMNMGQKLSGGVKSVSRDCTAPFKAVVARELAPEPPRPARLDALLDAPPAHPDTQVKHAWNPDDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -