Ehec006723.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010006598.1:1419216-1426239[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0081 0.6 11.1 2.5 1 23 103 125 103 125 0.94 2 18 0.55 41 5.4 0.5 2 23 131 152 130 152 0.95 3 18 3.7e-05 0.0027 18.5 1.0 1 23 156 178 156 178 0.98 4 18 2.9e-05 0.0021 18.8 2.4 1 22 184 205 184 205 0.96 5 18 1.6e-05 0.0011 19.7 1.8 2 23 217 238 216 238 0.97 6 18 5.4e-07 4e-05 24.3 0.7 1 23 244 266 244 266 0.99 7 18 4.8e-06 0.00035 21.3 2.7 1 23 272 294 272 294 0.98 8 18 4.4e-05 0.0032 18.3 6.1 1 23 300 322 300 322 0.98 9 18 1.1e-05 0.00079 20.2 2.2 2 23 329 350 328 350 0.97 10 18 0.0004 0.03 15.2 8.5 1 23 356 379 356 379 0.97 11 18 1.3e-06 9.5e-05 23.1 3.3 1 23 435 457 435 457 0.97 12 18 0.00038 0.028 15.3 2.5 1 21 463 483 463 484 0.96 13 18 0.00013 0.0097 16.8 1.3 2 23 497 518 496 518 0.97 14 18 5.4e-06 0.0004 21.1 1.1 1 23 524 546 524 546 0.99 15 18 1.1e-05 0.0008 20.2 2.4 1 23 552 574 552 574 0.98 16 18 0.00086 0.063 14.2 4.2 1 23 580 602 580 602 0.97 17 18 3.2e-05 0.0023 18.7 0.3 2 23 609 630 608 630 0.97 18 18 0.0064 0.47 11.5 2.7 3 23 638 659 636 659 0.96
Sequence Information
- Coding Sequence
- ATGGAGGACATTGTTAAAATAAAAATTGAGCCGTTTGATGAGGCAGAGGAGAGTGAACATTTAGAAACTGAACCGGAATTTATTACGATTAAAACCGAGATTGATGATTCTGTGAAGCCTGACCAAGCTGAAGCATCCGAAGAACAAGAAGCTTGCAGCAATGTCGTCAACCTCTGCGTCGTGAAAGAAGAATCGGAGGATAATGATTTTATTATACCGGACATTGGAGGACCTCAGGGGCCAGTGAATTCAGTTGACGGTGTTACTGAAGCGGATCTAGCGGTAAACGCAGTCGAGTGTGGGAAATATACGTGTGCTGTTTGCTGCCGGCGATTCGCGACTAAAAGTCACCTAATTGCTCATAACATCCTCCACACCAGACAAACACTAGAATGTCACATATGCCTCTTGCGATTAAACTCCTTGCAAGATTACGAGGACCATATCTCCAACCACGAACGGAAGTATCCCTGCAAGGAGTGTGGGAAACGCTTCCTGAGCGTGTCCAATTTGACACAGCACTCGAAGACACATTTGTTGGTAAAACCACATCAGTGTGAGAAGTGTCAACGACGGTTCACAGTGAAAGCCAACTTGAGTCGACATCAGAAGACCGGTAGTTGCAAGATCGTGGAGAAGCTGCCACTTAAGTGCAACGTTTGCGAGAAAGTTTTCAAGAAGGAATTCCTCCTCAAAAGTCATCTGAGACGGCATAGCTCGGAGAAACCGTTTAAATGCGAAGTGTGTGGTATGGAGTTCAAATACAAGTCAACGCTAGTCCGTCATATTCAGATGCATAATGATGTTAGGCCGTTCTCGTGCAAGTACTGCGGGAAAACGTTTACTCATGCCGGTTTGCTCAAGCCCCACTTGCGCAAACATACCGGTGAGAAGCCATACTCCTGTCCAGGTTGTAACAAGAAATTTTCCCACAAGCATAACATGCTTCGTCATTCTATGAGGCATAGTAAAGAAAAGAACCTACAATGCAAGTTGTGCCATAAAGTATTCCCCCGAGAAAGTCGTCTAATATACCACATGAGGTCCCATACCAACAGCAAGCCCTTCAAATGCAATATTTGCTTCAAAAAGTTCTCTCATAAGCACAACGTGATCAGACACTATCAAAGGAAGCATCCGAATGACACGTATGAAACTAAATTCACGGACGCGACGATCGCGAAGCAAGTGTGGTTAAAAGTGCAAGAGAAGTTGAACAGAGAAGTAGAGAAAGAAGAAACAGAGTTCAATAACCTACAAGATTATGAAGGGCATCTAGTAGACCATACTTTGGAAAAGAAGTTCGAATGTCAGGAGTGTGGAAAACGGTTCAGGAGTAGCTCCAATCTCCATCAACACAGCAAAATCCACCTTGAAGTCAAACCGTTCCATTGCGAGAAGTGCTTCAAACAATTTCCGGTACGATCTCATCTGATAAAGCACCAACGCGCTAAAGGTCGTTGCAAGATACAAACTGACACGCCTTTAAAATGCAATGTTTGCGATAAATTGTTTGTTAAGGAATTCCTTCTTAAGAGTCACTTGCGTAAGCATACGGATGAGAGACCGTACCAATGCGATCTGTGCAAGATGTTCTTCAAGTATAAGTCGGCGTTAGTCAGACATATACAAGTGCATAATAATGATAAGCCGTACTCTTGCGAGTACTGTCATAAGACATTCACCAACGCCGGGTTGCTGAAACCCCATTTGAGGAAGCATACAGGGGAGAAACCATTCCCCTGTCCCGCGTGTAATAAAAAGTTCGGACACAAACATAACATGCTTCGTCATTTAACAAGACACGATAAAAAGAAGAATTTAGTGTGCAAAATTTGCGAGAAAGTATTCCCCAAAGAAAGTCGTCTGGTCTACCATATGAGGTCGCATACGAACAGCAAGCCGTTCGGCTGTGATGTGTGCGCAAAGAAATTCTCTCACAAACAAAATATAATGCGGCATTACGAGAAGAAACATCCTCACGTGAAATATGTTATAAAAATAACAGACGCTAGTGTCGCTAGGACTGTTTGGGAGAAGGTGCAGAAGAAATTGAACCAAGAGGGCGGCGAGTGA
- Protein Sequence
- MEDIVKIKIEPFDEAEESEHLETEPEFITIKTEIDDSVKPDQAEASEEQEACSNVVNLCVVKEESEDNDFIIPDIGGPQGPVNSVDGVTEADLAVNAVECGKYTCAVCCRRFATKSHLIAHNILHTRQTLECHICLLRLNSLQDYEDHISNHERKYPCKECGKRFLSVSNLTQHSKTHLLVKPHQCEKCQRRFTVKANLSRHQKTGSCKIVEKLPLKCNVCEKVFKKEFLLKSHLRRHSSEKPFKCEVCGMEFKYKSTLVRHIQMHNDVRPFSCKYCGKTFTHAGLLKPHLRKHTGEKPYSCPGCNKKFSHKHNMLRHSMRHSKEKNLQCKLCHKVFPRESRLIYHMRSHTNSKPFKCNICFKKFSHKHNVIRHYQRKHPNDTYETKFTDATIAKQVWLKVQEKLNREVEKEETEFNNLQDYEGHLVDHTLEKKFECQECGKRFRSSSNLHQHSKIHLEVKPFHCEKCFKQFPVRSHLIKHQRAKGRCKIQTDTPLKCNVCDKLFVKEFLLKSHLRKHTDERPYQCDLCKMFFKYKSALVRHIQVHNNDKPYSCEYCHKTFTNAGLLKPHLRKHTGEKPFPCPACNKKFGHKHNMLRHLTRHDKKKNLVCKICEKVFPKESRLVYHMRSHTNSKPFGCDVCAKKFSHKQNIMRHYEKKHPHVKYVIKITDASVARTVWEKVQKKLNQEGGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00711182;
- 90% Identity
- iTF_00711182;
- 80% Identity
- -