Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.4e-05 0.018 15.5 1.6 13 43 57 84 51 85 0.92

2 6 0.89 1.2e+03 0.1 0.2 14 29 88 103 86 106 0.84

3 6 0.0045 5.8 7.5 9.5 3 44 106 164 104 164 0.97

4 6 0.013 16 6.0 0.5 18 29 171 182 165 193 0.81

5 6 0.00045 0.59 10.6 1.4 8 29 190 211 184 225 0.77

6 6 0.051 67 4.1 6.0 12 43 222 250 211 251 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.4e-05	0.018	15.5	1.6	13	43	57	84	51	85	0.92
2	6	0.89	1.2e+03	0.1	0.2	14	29	88	103	86	106	0.84
3	6	0.0045	5.8	7.5	9.5	3	44	106	164	104	164	0.97
4	6	0.013	16	6.0	0.5	18	29	171	182	165	193	0.81
5	6	0.00045	0.59	10.6	1.4	8	29	190	211	184	225	0.77
6	6	0.051	67	4.1	6.0	12	43	222	250	211	251	0.80

Coding Sequence: ATGGAGCCTGAAATAGAAGAAATAACTGTTAAGCCAGATTTCATACACATAGACATTAAAATAGAATCGTGTCAAGACGAGCCAAATGAAGAAGCAAGTCAAGAATCAGAACTAGATACATCGCAAGATTGTGACCTTAGTAATGTAGATAAAGTGTACACAAAAGGCAAAAGGAACAGACTGCAATGTCCGAAATGCGATAAAACATTAAAAAACCGAGCTAATTTAAAGCAGCACTTACGCACTGTGCATTTAGAAGAATCAGAAAACGTTGAATGCTCTCAATGTTTCAGAACGTTTAAATCGAAAGAGTATCTATGGAACCACATACATGCGGTCCACAGAGATGTGAAGGAAGTCGCCTGTCCCGATTGTGGTAAAGTTTTCTTAAACAAGCGACGACTGGACAATCATATATACTACACCCATCGGGACGTTACCCCAATACAATGTACGAAGTGTGAAAAACGGCATATGAAAACAACGCATCCTCCGAAAGAAGCGGAAGAGACTTGTGAAGTTTGTCACAAAACTTTTAAATCTGGTCTTCATTTACGAATACATACATCAGCTGTACATTCCAATGAAGGAAAAGTCACCTGTGACATATGTAACAGAGATTTCTCATCGAAAAAGTATTTATTAAGACACAGATTAACGCACATCAGAGAGAAAACTTTGCCGTGTAACGTATGTAATAAGCTGTTCAAATCTCAAACTCATTTAAGGAAGCATCAGCGTAGGGTCCATGAGAAAAATTTATAG
Protein Sequence: MEPEIEEITVKPDFIHIDIKIESCQDEPNEEASQESELDTSQDCDLSNVDKVYTKGKRNRLQCPKCDKTLKNRANLKQHLRTVHLEESENVECSQCFRTFKSKEYLWNHIHAVHRDVKEVACPDCGKVFLNKRRLDNHIYYTHRDVTPIQCTKCEKRHMKTTHPPKEAEETCEVCHKTFKSGLHLRIHTSAVHSNEGKVTCDICNRDFSSKKYLLRHRLTHIREKTLPCNVCNKLFKSQTHLRKHQRRVHEKNL

Sequence clustering based on sequence similarity using MMseqs2