Ehec016379.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010005620.1:3362261-3363195[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-12 5.6e-09 36.0 0.0 2 41 32 72 31 74 0.91 2 2 9.5 6.9e+03 -2.7 0.0 21 29 94 102 92 104 0.84
Sequence Information
- Coding Sequence
- atggcgaatacaccgAAAAACAAATTTAAATCACGTATTAGACAAAGAACGTCTAGACGAGAATTAGGATCGAGGATGTATAAAAACTATTCCGAAGAAATGTTAATGCTTGCGTGTGAAGCTGTGCAGTCGGGTCAAATTTCATTGAGAGATGCTCAACGACAGTTTGGAATCCCAAGAAGGACTATCGTTAATAAAACAACACGGGTACACACGAAATCTGTTGGACATCCTACTGCCCTTTCAGCTAAAGAAGAAGATCAAATAGTTAAGGTCTTACAAGCTTCTAGCAATTTTGGCTGCCCGCTTACAAAACTAGATCTGAAGCTATTAGTTCACGAATATCTGAAAAAGAATTCACGAGAACATGTTTTCAAAAATAAAATACCTGGTGATGCATGGGTACACAGCTTTTTGGCTAGACATGGTGATCAATTGACTTTGAGAACTGCTCAAAATATCTGTAAGGCGAGAGCTCAAAAAGGGAGCTCAAGAAATAAATAA
- Protein Sequence
- MANTPKNKFKSRIRQRTSRRELGSRMYKNYSEEMLMLACEAVQSGQISLRDAQRQFGIPRRTIVNKTTRVHTKSVGHPTALSAKEEDQIVKVLQASSNFGCPLTKLDLKLLVHEYLKKNSREHVFKNKIPGDAWVHSFLARHGDQLTLRTAQNICKARAQKGSSRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710134; iTF_01154999;
- 90% Identity
- iTF_00710134;
- 80% Identity
- -