Ehec010912.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- Pdhb_1
- Assembly
- GCA_026213755.1
- Location
- JADANM010005714.1:9497697-9510821[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4 6.1e+03 -2.5 0.1 25 30 73 78 72 79 0.83 2 2 1.9e-12 1.4e-09 38.0 0.0 1 38 237 275 237 280 0.89
Sequence Information
- Coding Sequence
- ATGTCGGCTGGTGCGGTACCAGTCCCGATTGTGTTCAGAGGTCCCAATGGTGCGGCAGCAGGAGTAGCCGCCCAACATTCACAGTGCTTCGCCGCTTGGTACAGCCATTGCCCAGGATTGAAAGTTCTCATGCCTTATTCGTCTGAAGATGCCAAGGGTCTCCTAAAAGCGGCTATCCGTGATCCCGACCCAGTGGTATTCCTAGAAGATGAGATTCTATATGGAATCCCATTCCCTATGTCGGATGAAGCTTTGTCATCTGACTTTGTGCTGCCTATTGGGCAAGCTAAGATCGAGCGCGAAGGTAAACACATAACGCTAGTATGCGCTGGCAAAGCGACAGACACAGCACTGCAGGCTGCCAACGAACTCGCTGGAAAAGGTATTGAATGCGAAGTAATAAACCTGCGGTCGATCAGGCCGTTGGACTTTGACACCATCGCTCGCTCAGTGGCCAAGACGCACCATCTTGTTACCGTTGAACAGGGCTGGCCCCAGTCTGGTGTTGGGGCGGAGATCTGCGCGCGGCTGATGGAGTCGCCGGCGTTCTTCGAGCTGGACGCGCCCGTGTGGCGCGTGGCGGGCGCCGACGTGCCCATGCCGTACGCGCGCGCGCTCGAGACGCTCGCTCTGCCGCGACCAGGCGACGTGTGCGCCGCCGCCGCCGCCGTGCTCTCCAACAGGTCGATATGTCAAACAAAAAGTACTTCCAACGAGGACCTCGCCAAAGCTTTAGAGGATATAAAAAATGGATCCATGACCATATATCGTGCATCTAAGGTATATAACATACCCAACCAGACCTTGCATGATAAAATTAATAAAAAATACAAAAAACAAGAGTCAGCAGGAGCTCCAACAGTCCTGTCATCGACAGAAGAAGGTTTGTTGGTAAAATGGGTACTGCATATGGCCGAAATTGGATTTCCAGTTACGAAAGATCAACTGCTACACTCGGTAGCTAAATTACTGATAGGATTGAAGCGACAAAATCCATTCAAGGACGGAGTCCCTGGCAGACATTGGTACGAGGCCTTTCTGAAAAGAAACCCAATGATAAGCAAGAGATCTAACTTCGAGGCGTGTTCGCAGCGCTGTATGCTGACCAATCAGCGCTGCTTCGTATGCAGTTCAGCGTTTGCTGAGAAGTGGTTTTCTAAGCCACGCTATTGTCAAGCTAAGATCGAACGCGAAGGTAAACACATAACGCTAGTATGCGCTGGCAAAGCGACAGACACAGCACTGCAGGCTGCCAACGAACTCGCTGGAAAAGGTATTGAATGCGAAGTAATAAACCTGCGGTCGATCAGGCCGTTGGACTTTGACACCATCGCTCGCTCAGTGGCCAAGACGCACCATCTTGTTACCGTTGAACAGGGCTGGCCCCAGTCTGGTGTTGGGGCGGAGATCTGCGCGCGGCTGATGGAGTCGCCGGCGTTCTTCGAGCTGGACGCGCCCGTGTGGCGCGTGGCGGGCGCCGACGTGCCCATGCCGTACGCGCGCGCGCTCGAGACGCTCGCTCTGCCGCGCCCAGGCGACGTGTGCGCCGCCGCCGCCGCCGTGCTCTCCAACAGGTGA
- Protein Sequence
- MSAGAVPVPIVFRGPNGAAAGVAAQHSQCFAAWYSHCPGLKVLMPYSSEDAKGLLKAAIRDPDPVVFLEDEILYGIPFPMSDEALSSDFVLPIGQAKIEREGKHITLVCAGKATDTALQAANELAGKGIECEVINLRSIRPLDFDTIARSVAKTHHLVTVEQGWPQSGVGAEICARLMESPAFFELDAPVWRVAGADVPMPYARALETLALPRPGDVCAAAAAVLSNRSICQTKSTSNEDLAKALEDIKNGSMTIYRASKVYNIPNQTLHDKINKKYKKQESAGAPTVLSSTEEGLLVKWVLHMAEIGFPVTKDQLLHSVAKLLIGLKRQNPFKDGVPGRHWYEAFLKRNPMISKRSNFEACSQRCMLTNQRCFVCSSAFAEKWFSKPRYCQAKIEREGKHITLVCAGKATDTALQAANELAGKGIECEVINLRSIRPLDFDTIARSVAKTHHLVTVEQGWPQSGVGAEICARLMESPAFFELDAPVWRVAGADVPMPYARALETLALPRPGDVCAAAAAVLSNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -