Esim002246.1
Basic Information
- Insect
- Euproctis similis
- Gene Symbol
- -
- Assembly
- GCA_905147225.1
- Location
- LR990103.1:27298528-27304424[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.19 19 6.9 0.0 1 23 35 58 35 58 0.93 2 20 0.85 85 4.8 0.1 2 23 85 107 84 107 0.93 3 20 0.00084 0.084 14.3 2.8 2 23 130 151 129 151 0.96 4 20 0.0073 0.73 11.3 0.1 1 23 155 177 155 177 0.91 5 20 0.028 2.8 9.5 4.4 1 23 182 205 182 205 0.96 6 20 0.14 14 7.3 1.9 2 23 213 235 212 235 0.91 7 20 0.065 6.5 8.3 4.1 2 23 243 265 242 265 0.96 8 20 1.4e-05 0.0014 19.9 1.2 1 23 271 293 271 293 0.98 9 20 3.7e-07 3.7e-05 24.8 2.7 1 23 299 321 299 321 0.99 10 20 0.0097 0.97 10.9 0.4 1 15 327 341 327 343 0.89 11 20 0.23 23 6.6 0.0 1 23 392 415 392 415 0.93 12 20 0.16 16 7.1 0.1 2 23 442 464 441 464 0.93 13 20 9.3e-05 0.0093 17.3 1.8 2 23 487 508 486 508 0.97 14 20 1.4 1.4e+02 4.1 0.1 1 20 512 531 512 534 0.84 15 20 0.028 2.8 9.5 4.4 1 23 539 562 539 562 0.96 16 20 0.3 30 6.3 2.0 2 23 570 592 569 592 0.91 17 20 2e-05 0.002 19.4 1.8 2 23 600 622 599 622 0.96 18 20 1.1e-05 0.0011 20.2 2.0 1 23 628 650 628 650 0.98 19 20 6.5e-06 0.00065 20.9 2.4 1 23 656 678 656 678 0.99 20 20 1.2e-05 0.0012 20.1 2.3 1 23 684 707 684 707 0.98
Sequence Information
- Coding Sequence
- ATGCAACCTAAAATATGTGACTTGAAAAAGCACCGAAGTAACATAAGACTTATACTGCAATGTTCAAATGCAACTCCCATTAGGTGTAGAGGAGGTATCGGTTATGCATGCAGTTTTTGCGAAGATGAGTACCCAGATCCCGCTGATTTAAAAACGCACACATTACTAGGACATGACGATAAAACAAAACTGAAATTTATGAGTGGAAGAGTTATGTCATCATATCTGGTCAAACTGGACATTACGAATCTGCGCTGTACTATCTGTAACagtaatataaatacatttgaaGAGCTGATAGACCATCTCGTCAAAGTTCACGGGAAATCACTTTATACCAATATAAAAAGTCACATAATGCCATTTAAGTTTATTGACGATAGTTTATCATGCCTGTATTGCTCACACGTCTTTAATAGGTTCTTAAATTTGCAACAGCACATGAACTCGCATTTTAGGAATTTTGTTTGCGAAATATGTAGCGCTGGTTTTATCAACAAACACATGCTTGCCACTCATGCAGTGGCACACAAACTCGGTAGTTTCAAATGTGATATGTGCTCAAAAGTGTTCGATACACATCGAAAGAAAAAGAGCCATGAAAAATCTGTTCACGTGCATGGAAATTTAGTCAGCAAGTGCGGATACTgcaatctaaaatttactaattacaaaaaaaaggatCGCCATTTATCAGAAGAGCATGGAGTAGTGCTAAAAGTTATTAAATGTCACGCGTGTGATAAAACGTTTGAATGTAAGAACGCTTTGACTGTACACACGAAAAgggatcacctgatggaaagaaGATTTCGCTGTACGGAATGTGATAAGGCATTTTTTGGATCGTATCAACTAAAATTACACATGGTAAAACATAGCGGGCTAAGAGAGTTCAGATGTAATGAATGTCAAAAAACTTTCACGAGAAAGTTGACTTTAAGAGAACACATGAGAATACATAATGATGATAGACGATTTAAGTGTGAACATTGTGGTCAAGCCTTTATACAAAAGCGTAGTTGGAAAGGTCTCGGACGTAATGCCGCAGAAACGGCTAATGAAAAACCGGTACAACCTAGGATATATGAATTGGAAAAGCACCGAAGTAATATAAGACTAATATTGCAATGTTCAAATGCTACTCCTATTAGGTGTAGAGGCAGCATAGGTTATGCATGCAGTTTTTGCGGTGATGAGTACCCAGGTCCTGCTGAGTTAAAAACTCACACATTACTTGCACATGACGATAAAACAAAACTGAAATTTATGAGTGGAAAAATGATGTTCTCTTATCTGGTCAAATTGGATATCACGAATTTGCGTTGTAAAATTTGTAACAACAATATAAACACATTAGAACAGCTGATAGACCATCTCGTCAAAGTTCACGGGAAATCACTTTATACCGATATAAAAAGTCACATAATGCCATTTAAGTTTATGGACGATGTATTATCGTGTCTGTATTGCTCAAACGTTTTCAATAGATTCAAAAATTTGCAACAGCATATGAACACGCACTTTAGGAATTTCATTTGCGAATTTTGTAACGCTGGATTTATCAACAGACACATACTAGCCACTCATGCAGTGGCACACAAACTCGGTAGTTTCAAATGTGATATGTGCTCAAAAGTGTTCGATACACATCGAAAGAAAAAGAGCCATGAAAAATCTGTTCACTTATATGCCAATTTACTCAGCAAATGTGGATACTGCAACCTTAAATTCACTAATTATAAGAAAAGGGATCTGCATTTGTCTAAAGAGCATGGAGTAGTgctaaatgttattaaatgtcaTGCGTGTGATAAAACTTTTGAAAGTAAAAGTGCTTTGACTGTACACACAAAACGGGATCATCTCATGGAAAGAAGGTTTCGTTGTACAGAATGtgataaaacattttttggatcttatcaattaaaattacatatggTAAAACATACTGGGATAAGAGAGTTCAGGTGTAATCAGTGTCTAAAGACATTCGGAAGGAGTAAGACTTTAAAAGAACACATGAGAATACATAATGACGATAGACGATTCAAATGTGAACATTGTGGACAAGCGTTTATTCAGAAGCGTAGTTGGAAAGGTCACATGAGAAGTAGACACGGAACATTAGTCTAA
- Protein Sequence
- MQPKICDLKKHRSNIRLILQCSNATPIRCRGGIGYACSFCEDEYPDPADLKTHTLLGHDDKTKLKFMSGRVMSSYLVKLDITNLRCTICNSNINTFEELIDHLVKVHGKSLYTNIKSHIMPFKFIDDSLSCLYCSHVFNRFLNLQQHMNSHFRNFVCEICSAGFINKHMLATHAVAHKLGSFKCDMCSKVFDTHRKKKSHEKSVHVHGNLVSKCGYCNLKFTNYKKKDRHLSEEHGVVLKVIKCHACDKTFECKNALTVHTKRDHLMERRFRCTECDKAFFGSYQLKLHMVKHSGLREFRCNECQKTFTRKLTLREHMRIHNDDRRFKCEHCGQAFIQKRSWKGLGRNAAETANEKPVQPRIYELEKHRSNIRLILQCSNATPIRCRGSIGYACSFCGDEYPGPAELKTHTLLAHDDKTKLKFMSGKMMFSYLVKLDITNLRCKICNNNINTLEQLIDHLVKVHGKSLYTDIKSHIMPFKFMDDVLSCLYCSNVFNRFKNLQQHMNTHFRNFICEFCNAGFINRHILATHAVAHKLGSFKCDMCSKVFDTHRKKKSHEKSVHLYANLLSKCGYCNLKFTNYKKRDLHLSKEHGVVLNVIKCHACDKTFESKSALTVHTKRDHLMERRFRCTECDKTFFGSYQLKLHMVKHTGIREFRCNQCLKTFGRSKTLKEHMRIHNDDRRFKCEHCGQAFIQKRSWKGHMRSRHGTLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -