Esim006690.1
Basic Information
- Insect
- Euproctis similis
- Gene Symbol
- -
- Assembly
- GCA_905147225.1
- Location
- LR990106.1:16284681-16290639[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.03 3 9.4 2.0 1 23 16 39 16 39 0.97 2 22 0.0029 0.29 12.6 1.0 1 19 44 62 44 66 0.93 3 22 0.00083 0.083 14.3 1.6 1 23 72 95 72 95 0.97 4 22 4.6e-05 0.0046 18.3 0.3 1 23 102 125 102 125 0.97 5 22 1.7e-05 0.0017 19.7 2.7 1 23 131 153 131 153 0.97 6 22 0.00063 0.063 14.7 1.1 1 23 160 183 160 183 0.97 7 22 0.13 13 7.4 3.4 1 23 187 210 187 210 0.96 8 22 0.00091 0.091 14.2 1.1 1 23 219 241 219 241 0.97 9 22 6.9e-06 0.00069 20.8 0.8 1 23 247 270 247 270 0.96 10 22 3.1 3.1e+02 3.1 0.9 2 23 280 298 279 298 0.83 11 22 0.00021 0.021 16.2 1.6 1 23 304 327 304 327 0.95 12 22 0.00015 0.015 16.7 0.5 1 23 355 378 355 378 0.98 13 22 0.14 14 7.3 4.1 1 23 382 405 382 405 0.96 14 22 1.6e-05 0.0016 19.7 5.1 1 23 410 432 410 432 0.97 15 22 0.00034 0.034 15.5 2.9 1 23 438 461 438 461 0.97 16 22 1.4e-05 0.0014 19.9 0.1 1 23 468 491 468 491 0.96 17 22 4.2e-06 0.00042 21.5 2.7 1 23 497 519 497 519 0.98 18 22 0.0013 0.13 13.7 1.0 1 23 526 549 526 549 0.97 19 22 0.00049 0.049 15.0 1.2 1 23 553 575 553 575 0.98 20 22 7.2e-05 0.0072 17.7 0.4 1 23 584 606 584 606 0.97 21 22 4.3e-05 0.0043 18.4 1.4 1 23 612 635 612 635 0.96 22 22 1.5 1.5e+02 4.1 0.7 2 23 645 663 644 663 0.86
Sequence Information
- Coding Sequence
- ATGGAagcaataataaaacatatacgCTTGGAGCACATTGGTCGGTACAAATGTGAACATTGCGACAGATATTTGCAAAGCATCATAACATTAAAGCAACACCTCAAAAATGTTCATGCAGAAGAATTATTTGAATGTGAGAAATGTAATAAAGTATTTCAGGACGATTACTCCCTGAAAGATCATGACAATTTGCATACCAAACAGTTTATATTCAAATGTGACTTCTGCAATAAAGATTTGTATAGCAAAAAAAcactaataatacatatacgGCAACAGCATGAACCTGATGGCAAACCGTATATCTGTGACATTTGCGGCGGGAACTTTAACTATCAAGCTACTTTTAGAAAACACATGAACTCTGTTCATTTGAAACTGAGGCCTTTCGCTTGTACTCTCTGTGATAAATCGTATTCAGCTCAAAAACATTTGAACTATCATATGAACACGCATTTGGGAAATATTAAAGTTTTCAAATGCGAATATTGTACAAAAACTTATATAGTTGAAAAGAATTTGAGTTACCATAAGATGGTGGTGCATGAAAACAAATTTCCTTGTAGATATTGTCGTGCCATGTTCAAAGACAAGGAGCACCATGCTATACATATCAAATCATCTCATAAAAAGGCAGCTCCATATGATCCACATACTTGTGACTTATGTGGCAAGGTACTAATGTCAAAGTTTACATTGGACAGACATATAGAATCACATAAAGGTATCTATAGGTATCCCTGTGATATTTGCGACATGAAATTTACACAAAAAGCCGGATTGAAAAGACACAAATTAAGAAAACACAATACAAATGCAAGTAATGAGAAAGTGAAATGTGAGCGATGTAAGAAGATGGTTAAAAATATCGAGAGACATATGGCAACACATGATGATGAGACCAGGTTCTCTTGCGATCTATGCGATAAAAATTACGCTCAAAATAACGCGTTGACTAGACATAAGAATCATGcacattttaatttatcttttgACTgGATTCAATTTAGACTGGCGCATTCACACATAGTTCAGGTGAAGACTAAGAAAGGCATAACATATTCTTGTAAGACGTGTGAGGGTAGTTATGAAACTAAGAAAgcattaataaaacatatacgCTCAGAGCACTTTGGTCGGTACAAATGTGAACATTGCGACAGACATTTGCTTAGCATTACTACATTAAGGCGACACCTCAAAAATGTTCATGCTAAAGAATTATATGAATGTAAGAAATGTAATAAAACCTTTAAGCACAATTACTCCCTGAAAGATCATGAAAATTTGCataccaaagagtttatattCAAATGTGACCTgtgcaataaaaatatgtacagcAAAAGTACACTAAGAAAACATATACGTCAACAGCATGAACCTGATAATAAACCGTTTATCTGCGACATTTGCGGCTGGGCCTTTTATGATAAAACTAATTTAGGAAAACACGTGAACTCTGTTCATTTGAAACTGAGGCCATACGCTTGTAATCTCTGTGGTAAAACTTATTCAGCTCAGAAACATTTGAAATATCATATGAACACGCATTATGCAAATATTAGAGGATTCAAATGCGAATATTGTACAAAAAGTTATGCGCTTGAGAAGAGTTTGAGTTACCATAGGATGGTGGTGCATGAAAACAAATTTCCTTGTAGATATTGTCCTGCCATATTCAAAGACAAAAAGCACCGTGCTATACATATCAGATCTCATCCAAAGACGTCTCTACCCAGTCCATATACTTGTGACTTATGTGGCAAGGTACTAATGTCTAAGTTTACATTGAACAGACATATAGAATTACATAAAGGTATCAAAAGGTATTCCTGTGATATTTGCGACATGAAATTCTCACAAAAAGCCGTATTGAAAAGACACAAATTAAGAAAACACAATACAAATGCAAGTAATGAGAAAGTGAAATGTGAGCAATGTAAGAAGATGGTTAAAAATATCGAGAGACATATGGCAACACATGATGATGAGACCAGTACTATACCTACTGTAGTATCACTTATTAGTCTGCAGATTCAGATTCTTCAAAATATATTCAAGAAAGAACGATGctga
- Protein Sequence
- MEAIIKHIRLEHIGRYKCEHCDRYLQSIITLKQHLKNVHAEELFECEKCNKVFQDDYSLKDHDNLHTKQFIFKCDFCNKDLYSKKTLIIHIRQQHEPDGKPYICDICGGNFNYQATFRKHMNSVHLKLRPFACTLCDKSYSAQKHLNYHMNTHLGNIKVFKCEYCTKTYIVEKNLSYHKMVVHENKFPCRYCRAMFKDKEHHAIHIKSSHKKAAPYDPHTCDLCGKVLMSKFTLDRHIESHKGIYRYPCDICDMKFTQKAGLKRHKLRKHNTNASNEKVKCERCKKMVKNIERHMATHDDETRFSCDLCDKNYAQNNALTRHKNHAHFNLSFDWIQFRLAHSHIVQVKTKKGITYSCKTCEGSYETKKALIKHIRSEHFGRYKCEHCDRHLLSITTLRRHLKNVHAKELYECKKCNKTFKHNYSLKDHENLHTKEFIFKCDLCNKNMYSKSTLRKHIRQQHEPDNKPFICDICGWAFYDKTNLGKHVNSVHLKLRPYACNLCGKTYSAQKHLKYHMNTHYANIRGFKCEYCTKSYALEKSLSYHRMVVHENKFPCRYCPAIFKDKKHRAIHIRSHPKTSLPSPYTCDLCGKVLMSKFTLNRHIELHKGIKRYSCDICDMKFSQKAVLKRHKLRKHNTNASNEKVKCEQCKKMVKNIERHMATHDDETSTIPTVVSLISLQIQILQNIFKKERC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -