Ever005461.1
Basic Information
- Insect
- Eupristina verticillata
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHALOE00000225:1377602-1382446[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.7e-06 0.00056 19.7 1.2 1 23 86 109 86 109 0.96 2 12 0.00018 0.013 15.3 3.6 2 23 116 138 115 138 0.95 3 12 1.8e-05 0.0013 18.5 4.0 1 21 145 165 145 166 0.95 4 12 8.2e-09 5.9e-07 29.0 1.8 1 23 177 199 177 199 0.98 5 12 1.4e-05 0.001 18.8 1.0 2 23 209 230 208 230 0.97 6 12 0.0097 0.71 9.9 0.4 2 23 237 258 236 258 0.96 7 12 9.1e-07 6.6e-05 22.6 2.8 1 23 264 286 264 286 0.99 8 12 9.6e-06 0.0007 19.4 2.6 1 23 292 314 292 314 0.95 9 12 1.1e-05 0.00076 19.3 1.4 1 23 320 343 320 343 0.94 10 12 8.5e-08 6.1e-06 25.8 0.6 1 23 349 371 349 371 0.98 11 12 2e-07 1.5e-05 24.7 4.1 1 23 377 399 377 399 0.98 12 12 4.1e-06 0.00029 20.6 0.9 2 23 406 428 405 428 0.95
Sequence Information
- Coding Sequence
- ATGTTAAAAGAACATTTACAAGTATGTAGAGAAGATGACGACACTGATATTTTAGAGTTAGGTAGAATGGCAGATTTAGATTCAGAGGATGAAGATGAAGGCAATATTGATGATCCAGATTATAATACAGATTCCAGTCCATCGGATTCTCAAAGTTCAAAAAATAATAATAAAAAAATAGCAATCAAACCAGTAGGAGAAGATCAATGTCATTGTTGTGGTGAAGATTTGAAAACAGCTCATTCTGGTGGTTTGTTTACATGTCCAAACTGTAATATGTCGTTTAAAAAGGCATGTTCTTTAGAAAGACATTTAATTGTTATTCACTGGGAATCTGATTCGTGTACATGTAATGATTGTGGTTCAACTTTTCGTGATAAAAAGGCTTTAGATAAGCATCGTTATACAACACATATAAAAACAAATAAAGTATATAAATGTGACAAATGTGATACTTATTTTTCAAGAAGCTACCATTTAAACCGTCATAAACAACAATCAGGTTGTAATGGAGACAGTAATAATAGTTTTTCATGTCAAGTCTGTAATAAAGTTTTTACTCGTAAAGATAATTTGCGAGAACATTTGCGAACTCATGCTGGAATGCCACAAAGAAAAAAAAAATCTTGCCAACTTTGTCCTAAGCAATTTTATACTAATCAACAGTTAATAATTCATCAGCGTATGCATACTGGGGAAAGACCAGTTGAATGCGATTTATGTCCTAAAACTTTCTTATCTACTTTAGCTATGAAAAAACATCGTAGGGTTCACACTGGAGAAAAACCTTTTGAATGCAAATATTGCAAAAAAAAATTTGCAGCAAGAGAAACATTAAATCGTCATCAGAGGACGCATACTGGAGAAAAACCTCATATTTGTCAATATTGTAATAAATCTTTTATTCAAGCTGCTCAATTAAGAGCACATATATTTCATCACACAGGAGAAAATGGCTTTTATTGTGATGTTTGTGGAAAAGCTTTTAATCGTAAAGCACGTCTTACGAATCATAAAAAATTTGTTCATGAAGGTGCTACACCATTTAAATGTGAAATATGTGAGAAAGCTTTTACACGTAAAGAAGATTTATCTAAGCACATAAATTTACATGCAGGAATTAAACCACATAAATGCAACACTTGTGGGAAATGTTTTGCTGCTAAATCATCATTACAAGCTCATATGAATACTCATCGAAGAGAACCACCTCAATCTTGTGCTGAATGTGGAAGAGCATTTATTCGTCAAGATTGTCTCATGCGACATATACGTGCAAAACATAGGGATCTTTTAGAAGACGTACTTGGAGAAGCAGAAAAAAAACACTTGCAATTACAAATGTTTAATATTGCTTATACTGCTGCTGAAAAAATGAAAACAGGAGAAACGAATATTCTTTCAACAAATGAATTGTTAAAAGCTATCACAGAACTCTTAACTGTTCTTATAGAAAAAGAAACTTTAGAGTTATTTGGTTGGTTGCAATCTCCTCTGCAAGACGTGTTAGAAGCTGTTATTCGCAGATGTGGTCATGAACCACTAACATCTGAAAGTGATTTATCACTTTCAGAAAGATTAAGAGGAAATGTTAAATTATTATTTAATGCTGTTATTGAAGATGAAAATGTAAAGGCTTTGTTAACAACGCAAACGGTTGACGAAGTGATTATGCATGTTCTTAAGTTATCCAAAAACAACAAAGAATTAGAAGAAAAATCGTGA
- Protein Sequence
- MLKEHLQVCREDDDTDILELGRMADLDSEDEDEGNIDDPDYNTDSSPSDSQSSKNNNKKIAIKPVGEDQCHCCGEDLKTAHSGGLFTCPNCNMSFKKACSLERHLIVIHWESDSCTCNDCGSTFRDKKALDKHRYTTHIKTNKVYKCDKCDTYFSRSYHLNRHKQQSGCNGDSNNSFSCQVCNKVFTRKDNLREHLRTHAGMPQRKKKSCQLCPKQFYTNQQLIIHQRMHTGERPVECDLCPKTFLSTLAMKKHRRVHTGEKPFECKYCKKKFAARETLNRHQRTHTGEKPHICQYCNKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLTNHKKFVHEGATPFKCEICEKAFTRKEDLSKHINLHAGIKPHKCNTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDVLGEAEKKHLQLQMFNIAYTAAEKMKTGETNILSTNELLKAITELLTVLIEKETLELFGWLQSPLQDVLEAVIRRCGHEPLTSESDLSLSERLRGNVKLLFNAVIEDENVKALLTTQTVDEVIMHVLKLSKNNKELEEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691361;
- 90% Identity
- iTF_00304581;
- 80% Identity
- -