Basic Information

Gene Symbol
SMARCC2
Assembly
None
Location
GWHALOE00000235:927228-933400[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.4e-15 2.3e-12 46.3 0.2 3 44 633 674 631 676 0.95

Sequence Information

Coding Sequence
ATGCTGTCGCTCGGCCCGAAGAAGGACGGGGGACCGAATCTCAAGTTCTTCGATTCCTCGGAGGTTCTGGCCCAGCTCGATTCGGTCAAACAGTGGCTCTTGAAAAACGCCAAAAAGTATATTCAGACAGATTTACCAACCAACAAAAGTCTATCTACTTTAATTGTACAAATTCTTCAATTTCAAGAGGATAATCTTGGAAAAAATGTTACTAAGCCTCCAATGACTAGGCTTCCTATGAAATGCTTTTTAGATTTTAAACCAGGAGGTGGATTATGTCAAATTTTATTAACAGCCTTTAGGTTTAAGCAAGAACAAGGATGGCGAAGATTCGATTTTCCAGTTGGAAAGTCTGGTACTCGTATGGATAGAATGGTAGAAATGCTTATTGCAATAGAAAGAGCATTAGTTCAAAATCGATGTCTATCTGTACCAAGTATATACGTAAGGTCAGACGTTGATAAGGCTACAGCAACAAAAGTTAAAGAATTAGTACGTCGCCATCAAGGAACAATAGCTGAAAGTGAAGATGAAGCGACGCACATAATTTTTCCTCCAGCTGATCCGCTTGAAGAAGAGTACGCTCGGCCGTGCTTTCGTCGCGATCGATCTGTATTATTACATTGGTACTATTTTCCAGACAGCTACGACTCTTGGATCAATATTGAACTTCCATGGGATTTTCCCGAAGCAGCTCTTGGAAACACATCTACAAAATCAACATATAAAGTTTCTGCTACTTGGGCACTAGATTTAGAACAGTATAATGAGTGGATGAATGAAGATGATTATGAAGTAGATGATAACGGTCAAAAAAAAGTTCATAAATACAGATTATCTGTTGAAGACCTAATGGCTCAACCACAACCACCTTCGTCAGCTAAGAAACAGAAAAGAAAAAGGTCACCTTCTCCTCCACCAAAACTTGGGAAACGGAAAAGTGGACGAGCCCCAGCCTGTGTGCAAGGACTATCAAATGTATCTTCAGCAGCTCCAAAGAAATCTCGTGGTGGTGTAGATGAAGAGGAGGATTTAACGCAAGGAATGGAAGATCCACCCGCAGAACCAAGGATAGTAGAAGTTATGGCTTCAAATGCTAATACACCAAACTCAGGTCAAAATAGTAGCTCAACGGGTGGTCTAATTTCTAGTAGCAAAAAACAAGACAATGAATTACAACCACTAAAATCTGGAAATATGGCTGATCTCGATGAACCTGCAGAAGGTGATAAAAGCAATTCTCAAACTTCTCAAGATAGAGAAGAAAGAGATACAAGTAAAGAAAGAGGTGATGGGAGTAAAAGTGATGAACCAGAAGATAATGTTACAGAACAGACTCATCATATTGTAGTACCAAGCTATTCAGCATGGTTCGATTATAATTCGATTCATACAATTGAAAAACGAGCTCTTTCAGAATTTTTTAATGGTAAAAATAAATCGAAGACACCAGAAATTTATCTGGCATATAGGAATTTTATGATTGATACCTATCGTTTGAATCCTACTGAATACATTACATCAACGGCGTGCAGACGCAATTTAGCTGGCGACGTCTGTGCTATAATGCGTGTACACGCCTTCCTTGAGCAGTGGGGTCTCATAAATTACCAGGTCGACGCGGAATCTCGGCCGACCCCCATGGGTCCGCCACCTACCTCCCACTTCCACGTGCTCTCGGATACACCGTCAGGACTAGCCCCAGTAAATCCAAATCCGCCCAAAACGCCGCAACCCCCAGCGGCAAAAACCCTCCTAGATCTCGAAAAGAAGCCCATAATTACAGATGAGAAGATGCCCACGTCCGGGGCGATGGCGAACTTTGGCCTGAAAATTGATCAGTATTCGAAGAAACCCGCGGTACTTAAGAATAAACAGGCCGCGGGTGCAACGCGCGACTGGACGGAACAGGAGACACTTTTACTACTTGAGGCTCTTGAGTTACATAAGGACGACTGGAATAAGGTGTGTGAGCATGTGGGATCGAGGACACAAGATGAGTGTATTCTGCATTTCTTAAGACTGCCCATCGAGGATCCTTACCTCGAAGAGCCTGAAGGCTTAGGACCACTGGCATACCAACCCATTCCATTCTCAAAAGCTGGAAATCCTGTTATGAGTACCGTGGCTTTCCTTGCATCAGTGGTTGACCCGAGGGTGGCAGCTAGTGCGGCTAAAGCCGCTATGGAAGAATTCGCCGCAATCAAGGATCAAGTACCCGCGGCACTCCTGGATCAGCATTTGCGAAACGTACAAGCTAGTGCTAATTCAGATGGTAAATTCGATCCAGCAGCAGGACTTGCTCAATCAGGTATTGCCGGCACGGGTCCACCGGAACCACCTGAAGAATCGAGTAACGCACAAAATGCCTCAGGTCAGCCAACGTCTACATCAGCAACGTCACCGCAATCTGCGTCTACGACGCCGGCCGAAGGTAAGAAAGAGGAAGCAACTGAAAAGGGCAAGGAAAAGGCTGAAGGTAACGAATCACCCGACGGCGCAACCCTAGCCGCACCGAAAAAGGAGGTCGACGGCACGGATGAAAGCAGTGAAACTCAGCAACCTGAGCCCGAAAAAATGGAAGTAGATTCGAAAGAAAACGAAGAAGGCGATCCCAAAACAAAGCTCGACGGAGAGGAAGGCGAGGCAAAGGAGAAGAAGGACAAGGTTGTCAGAGATGCCCAGTTGCAATCAGCGGCAGCAGCTGCTCTGGCCGCTGCCGCAGTCAAGGCTAAACATTTGGCAGCGGTCGAGGAAAGGAAAATAAAATCGTTGGTAGCTTTACTTGTGGAGACCCAAATGAAGAAGCTCGAGATCAAATTGCGTCATTTCGAGGAGTTGGAAACGACGATGGAACGGGAGCGCGAGGGCCTTGAGTATCAAAGGCAGCAGCTCATTACGGAGCGTCAGCAATTTCATCTCGAGCAACTAAAGGCTGCGGAATTTCGCGCACGGCAACAGGCACATCAGCGACTAGCACAAGAGCAGCACCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAACAGCAACAATCTCAGAATCAGCATCAGTCGCCGTGGCAGCCGGGTAGCAATCCATCATCTCAGCCATCGGTGACGGGGGCACAACCGGCTGCCATCGCCGCCCAACAGCAAGCGCAGCCAACGCCGCAGCAGCAGGGACAACCTCCAAGTCCACAGGCGCAGCCACATACGCCTCCGCAGCAGGCAGCATAA
Protein Sequence
MLSLGPKKDGGPNLKFFDSSEVLAQLDSVKQWLLKNAKKYIQTDLPTNKSLSTLIVQILQFQEDNLGKNVTKPPMTRLPMKCFLDFKPGGGLCQILLTAFRFKQEQGWRRFDFPVGKSGTRMDRMVEMLIAIERALVQNRCLSVPSIYVRSDVDKATATKVKELVRRHQGTIAESEDEATHIIFPPADPLEEEYARPCFRRDRSVLLHWYYFPDSYDSWINIELPWDFPEAALGNTSTKSTYKVSATWALDLEQYNEWMNEDDYEVDDNGQKKVHKYRLSVEDLMAQPQPPSSAKKQKRKRSPSPPPKLGKRKSGRAPACVQGLSNVSSAAPKKSRGGVDEEEDLTQGMEDPPAEPRIVEVMASNANTPNSGQNSSSTGGLISSSKKQDNELQPLKSGNMADLDEPAEGDKSNSQTSQDREERDTSKERGDGSKSDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPPAAKTLLDLEKKPIITDEKMPTSGAMANFGLKIDQYSKKPAVLKNKQAAGATRDWTEQETLLLLEALELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEPEGLGPLAYQPIPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANSDGKFDPAAGLAQSGIAGTGPPEPPEESSNAQNASGQPTSTSATSPQSASTTPAEGKKEEATEKGKEKAEGNESPDGATLAAPKKEVDGTDESSETQQPEPEKMEVDSKENEEGDPKTKLDGEEGEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQHQQQQQQQQQQQQQQQQSQNQHQSPWQPGSNPSSQPSVTGAQPAAIAAQQQAQPTPQQQGQPPSPQAQPHTPPQQAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01468781;
90% Identity
iTF_01523963;
80% Identity
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