Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4 4.6e+04 -3.6 1.9 15 19 123 127 123 127 0.85

2 8 0.17 5.5e+03 -0.7 0.7 4 10 158 164 157 165 0.88

3 8 6e-09 0.0002 23.1 15.2 1 19 172 189 172 189 0.99

4 8 1.2 4e+04 -3.4 1.0 15 16 204 205 201 208 0.53

5 8 0.51 1.7e+04 -2.2 0.4 5 10 214 219 214 219 0.83

6 8 3.9e-07 0.013 17.3 15.9 3 19 227 243 226 243 0.93

7 8 0.49 1.6e+04 -2.1 0.2 6 10 268 272 267 273 0.84

8 8 2.6e-06 0.084 14.7 7.1 1 18 278 296 272 297 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4	4.6e+04	-3.6	1.9	15	19	123	127	123	127	0.85
2	8	0.17	5.5e+03	-0.7	0.7	4	10	158	164	157	165	0.88
3	8	6e-09	0.0002	23.1	15.2	1	19	172	189	172	189	0.99
4	8	1.2	4e+04	-3.4	1.0	15	16	204	205	201	208	0.53
5	8	0.51	1.7e+04	-2.2	0.4	5	10	214	219	214	219	0.83
6	8	3.9e-07	0.013	17.3	15.9	3	19	227	243	226	243	0.93
7	8	0.49	1.6e+04	-2.1	0.2	6	10	268	272	267	273	0.84
8	8	2.6e-06	0.084	14.7	7.1	1	18	278	296	272	297	0.89

Coding Sequence: ATGAGGAAATTTCAAAGAGCTCAAGCACAAAATCAAGCATCTATCAAAAAACATTTAGAATCAAAGGCTATTGAATCTTCTAGTAGTGATGATGAAAATCAGGAAGTCTTAGATAATGCAGTAGAGAAAGTTTTACTGAATTATCAATCTGAAGGAGGTGATGTTATTAAAACTTTGTCATATTTAACTGAAATTTTTCAGTTTGGAGGAGCTGTTTGTTTAATATGTATTTCTTCAGTTAAAAAAGATGATGCAATTTGGAGCTGTATTAAATGTTATACTTTTTTACATCTGCCTTGCATTCAACACTGGATAAGAGATAGTCTAGCTTATAAACATGAAAAAGGAATTACACCTGTGTGGGGTTGTCCAAAATGTAGAACAGAATATAGAGAAGATGAAATACCAAAAAAATATATATGCTTTTGTGAAAAGGTTGAAGATCCACCTTATCAACCATGGTTGATTCCTCATTCTTGTGGAAATAAATGTGAAAAGTTTTTACAACCGAAATGTGGTCATAAGTGTATCCTTTTATGTCATCCAGGTTCCTGCCCTCCATGCCCAAAAATGGTATTCGTTTCATGTTTTTGTGGTAAACAAGCACCTTGTCCTAGAAGATGTAATGCTAAAGAGTGGACATGTGGTAGAATTTGTGATAAAAAATATATGACCTGTGAACATAATTGTACAGAAAAGTGCCATCCAGGTGCTTGTCCACCTTGTACAGAAAAGATTCTTTGTTCCTGTAACTGTAAAAATAAATTTGAGTTAAGAAAATGTAATGAATCTTTTTGGTCATGTGATAAAATTTGTGGTAGACGTTTTTCTTGTAACATTCATGTTTGTGAAGAATTTTGTCACAAAGATGGAGATTGTAGTACCTGTCTAATAGAAGGCAATAGAACTTGTCCATGTGGAAAAAAAAAAATGCAATATCTTGCAAGCAACAACAAGTTCCAACGTGTGGAGATACTTGTGGCAAATTATTAG
Protein Sequence: MRKFQRAQAQNQASIKKHLESKAIESSSSDDENQEVLDNAVEKVLLNYQSEGGDVIKTLSYLTEIFQFGGAVCLICISSVKKDDAIWSCIKCYTFLHLPCIQHWIRDSLAYKHEKGITPVWGCPKCRTEYREDEIPKKYICFCEKVEDPPYQPWLIPHSCGNKCEKFLQPKCGHKCILLCHPGSCPPCPKMVFVSCFCGKQAPCPRRCNAKEWTCGRICDKKYMTCEHNCTEKCHPGACPPCTEKILCSCNCKNKFELRKCNESFWSCDKICGRRFSCNIHVCEEFCHKDGDCSTCLIEGNRTCPCGKKKMQYLASNNKFQRVEILVANY

Sequence clustering based on sequence similarity using MMseqs2