Basic Information

Gene Symbol
stc
Assembly
GCA_018907245.1
Location
JACCHV010000077.1:99518-115084[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 6.6e+04 -4.2 1.6 15 19 443 447 442 447 0.81
2 16 0.29 9.7e+03 -1.4 0.1 4 10 475 481 474 485 0.93
3 16 3.3e-07 0.011 17.6 13.5 3 19 491 507 489 507 0.92
4 16 0.93 3.1e+04 -3.1 1.7 6 10 533 537 532 537 0.90
5 16 4.5e-08 0.0015 20.3 15.3 1 18 543 560 543 561 0.98
6 16 0.24 7.8e+03 -1.1 2.5 1 10 570 579 570 579 0.92
7 16 2.9e-07 0.0095 17.8 13.4 1 18 599 616 599 617 0.96
8 16 0.31 1e+04 -1.5 3.8 5 12 646 653 646 653 0.91
9 16 1.3e-05 0.44 12.4 13.1 4 18 664 678 657 679 0.85
10 16 1.4 4.6e+04 -3.6 2.0 5 10 708 713 708 713 0.93
11 16 0.011 3.8e+02 3.1 11.2 1 11 719 729 719 741 0.88
12 16 3.9e-10 1.3e-05 26.9 12.8 1 19 746 764 746 764 0.98
13 16 2 6.6e+04 -4.5 0.9 6 10 793 797 793 798 0.78
14 16 1.1 3.7e+04 -3.3 6.5 10 19 811 821 800 821 0.79
15 16 0.00027 8.9 8.3 12.2 1 15 857 871 857 882 0.88
16 16 7.7e-06 0.25 13.2 11.5 1 19 889 908 889 908 0.97

Sequence Information

Coding Sequence
ATGGCCACATGGGATGGTTCTTATACAGAAACAGATGAAGCAAATTATTGTGTCAATTCAACTAAAAATCAAACACCAGTTAATATGCCAATATGGGATTACTATGTTCCAGATGTTAACAATACATTTATACAAAATAATACAATGACCTTCTCAACAGATATGCCTACAGTTTTTGAACAAAGCACCCTAAATTTTTGTAATCATATTGACAAGAATATTATTCCTCCACTAATGACAAATTCAGAACCTTTGATATCGTATCAAAGAAATGAAATTCAGAGTTTTACAAATCAAATCCATGTACAATCTTCTAATATAAATGGCAATAGTATAAATAATCAACTGACATGTTTCTATGAAAATAATAGAACATTAATTGAAAAGTTACCTTCTCGTTACAATAAAAGTAACTTTCAAAATATGAACATGAAAGATAAATATAAGCATAAAACTTATCAAATAAATAATATTATTGAGAATTCAAATTTGCAAGTGACAGCTACTGAATTTATACCCAACTATAATAAAAGGGAGCAAGGAATTAATGAAAATCTAAATAAGAATGTCAAAAGAAAAACTTATATAGCTTATAAAAATCAAGATATTCAACAACCACTTGATAATAGTTTTTATGAAGATAATAAAATACAAGACAACAATAAAAAATTTGAAAATAAACAATTTAATGACAGAAGGTGGAGGAACATGAAATTATATAAAGATGATAAAAAAGATTGTGGAAAAAATAATATTAGAAGGTGTCAGAATGACAAATACTTTTATAATAGAAATGCTTGTAAAAAAATAGGAAATCAATTCGAAAAAGATGATGTAGAAGTTACTGTAGACATGAGTGCAAACAATCAACAGATTGAATTATTGAATGAACATCGAGGTAGATTTTATGATAAAAAAGAGCGATGTATTTCTAGAATTGTAAAAGATACAAAAGTTAAAAAAAATAATTACTTAGACTATAATGGACACAATAGAAAGAATTATAGTATAGATAAATATGTTAAAGGAGAAAATAAAAATTTTCTTGAACATAACCAAAAGAAAGAAATAATTGATTGGAGACAGAGAACAAATAAAAGTTCTTTATTAAAATCTGTTTATTGTAAAAAAAATGAATTTGATGATGCAAATCAAAGGGAAAGATTGACAGAACAATTAAATCGTGGCCAACTGGAATGTCTAGTTTGCTGTGAGTTTATTCGACAAATTGATTATGTGTGGTCATGTAAAAATTGTTATCATGTTTTACACTTAAAATGTATCAAAAAATGGGCTCAATCATCAAAAGATGAAACTGGATGGCGCTGTCCAGCTTGTCAAAATGTGACTGCTGAAGTATCCAACTATGAATGCTTTTGTGGCAAAATTCGAATGCCAGATTGGAATCGCCACGATAACGCACATTCATGCGGTGACATTTGTGGACGCTCACGTATAGATGTCAATTGCACCCACAAGTGCACATTACTTTGTCATCCAGGATCATGCCCACCATGTTCAGCTATAGTAAAAAGATTTTGTGGCTGTGGGAGAATGTCTCAAACACTCAAATGCAGCGCCAACATTATGCTACAGTGTCAGGAGATTTGCGAACGACCCCTCAATTGCGGTATTCACAAATGCGAAGTCAAATGTCATCACGGAAGTTGTGAACCCTGCGATAAAATTGTTGAACAAGAATGCTTCTGTGGAAAACACAATCGCGAACAAACATGCATTTTGGACTCATCACTGATGTATTCATGTAAATATATTTGTGACAAAATATTAGATTGTAATAATCATAAATGTAAAGAAATTTGTCACCCTGGAGAATGTGGACAATGTATTTTGAAACCTGAAACAGTTACTAATTGCTGTTGTGGACAAAGTGTTTTAACTGTTACAAGAAAAAATTGTATGGAACCAATTCCAACTTGTGAAAAAATATGTTGTAAATCCTTAAAATGTGGTCAGCCAAATAACCCTCATACCTGCCAAGTAAATTGCCACAATGGCGATTGTCCCAAATGTGAGCTTGTAACAAAAGTTAAATGCCGTTGCGGATACATGGATAAGGAAATTCCTTGTAAAGCATTAATAAGTAAAGCAGATGATGCTCGTTGTGAAAAAAAATGTATAAAAAAGCGTTCTTGTGGTAAACACAAATGTAATCAAATGTGTTGTATAGACATAGAACATATATGTCCACTTCCTTGTTCGAAAAATTTGAGCTGCGGTAGACACAAATGTGAAAAAACTTGTCACAGAGGTAGATGTGAACCGTGTTGGCGTAGTAGCTTCGAAGAGCTCTATTGCGAGTGTGGATCTGCCGTAATTTACCCACCAATAGCTTGTGGTACTCGAAAACCTGTTTGTAGCAAGCCATGTTCTCGAACTCATTCTTGTGATCATGAGATTTTTCATAGTTGTCACAGTGATTTAAACTGTCCACCTTGCACTGTCCTCACCCAAAAATGGTGCTACGGTGACCACGAGCTGCGAAAAGCTGTGCCTTGTTACGTTAATGAAGTTTCTTGTGGTTTACCTTGTGGAAAACCTATTTCATGTGGCATGCATAAATGCATTCAAAAGTGTCATCCCGATGTATGTGAGAAACCTGGACAAATATGCATTCAACCTTGCACTATTTCCAGAGAACTATGCGGTCATATATGTGCTGCATCTTGCCATTCGGGGAAGTGTCCCGACGTACCATGCAAAGAAATGGTTAAAGTGACTTGCCAATGTGGTCATCGAACAATGACCCGAGTGTGCGTTGAAAATTCTCGAGATTATCAGCGAATAGCGAGTGGAATTTTAGCCAGTAAAATGGCAGATGTACAATTAGGTCATTCGATTGATCTCGAAGAAGTTTTCGGTCAAGGAGCTAAAAAACAAAACCAGTTGAAAACTTTAGAATGCAATGATGAATGCAAAATAATAGAAAGAAACCGACGTTTGACTCTTGGACTACAAATTGAGAATCCAGATTTATGTGGTAAATTGATCCCGAAATATAGTGAGTATATGCGACAATGGGCAAAAAAGGATCCTGTATTTTGCCAAATGGTGCACGAAAAACTTACTGAGCTTGTGCAGTTAGCTAAAATATCTAAACAGAAGTGTCGTAGTTATTCTTTTGAAAGTATGAACAGAGATAAGAGGCATTTCGTGCACGAGTCTTGTGAGCATTTCGGCTGTGAAAGTCAGGCTTATGATCAGGAGCCAAAACGTAATATAGTTGCAACAGCAGTAAAAGATAAGTGTTGGTTACCAAGTTACAGCTTGATGGAATTATTACAAAGAGAAAATGGTCAGCGAAAGGTACCAGGACCAATGTTGAACAAATCAAAAACACATTCTGTTGATAGGTAA
Protein Sequence
MATWDGSYTETDEANYCVNSTKNQTPVNMPIWDYYVPDVNNTFIQNNTMTFSTDMPTVFEQSTLNFCNHIDKNIIPPLMTNSEPLISYQRNEIQSFTNQIHVQSSNINGNSINNQLTCFYENNRTLIEKLPSRYNKSNFQNMNMKDKYKHKTYQINNIIENSNLQVTATEFIPNYNKREQGINENLNKNVKRKTYIAYKNQDIQQPLDNSFYEDNKIQDNNKKFENKQFNDRRWRNMKLYKDDKKDCGKNNIRRCQNDKYFYNRNACKKIGNQFEKDDVEVTVDMSANNQQIELLNEHRGRFYDKKERCISRIVKDTKVKKNNYLDYNGHNRKNYSIDKYVKGENKNFLEHNQKKEIIDWRQRTNKSSLLKSVYCKKNEFDDANQRERLTEQLNRGQLECLVCCEFIRQIDYVWSCKNCYHVLHLKCIKKWAQSSKDETGWRCPACQNVTAEVSNYECFCGKIRMPDWNRHDNAHSCGDICGRSRIDVNCTHKCTLLCHPGSCPPCSAIVKRFCGCGRMSQTLKCSANIMLQCQEICERPLNCGIHKCEVKCHHGSCEPCDKIVEQECFCGKHNREQTCILDSSLMYSCKYICDKILDCNNHKCKEICHPGECGQCILKPETVTNCCCGQSVLTVTRKNCMEPIPTCEKICCKSLKCGQPNNPHTCQVNCHNGDCPKCELVTKVKCRCGYMDKEIPCKALISKADDARCEKKCIKKRSCGKHKCNQMCCIDIEHICPLPCSKNLSCGRHKCEKTCHRGRCEPCWRSSFEELYCECGSAVIYPPIACGTRKPVCSKPCSRTHSCDHEIFHSCHSDLNCPPCTVLTQKWCYGDHELRKAVPCYVNEVSCGLPCGKPISCGMHKCIQKCHPDVCEKPGQICIQPCTISRELCGHICAASCHSGKCPDVPCKEMVKVTCQCGHRTMTRVCVENSRDYQRIASGILASKMADVQLGHSIDLEEVFGQGAKKQNQLKTLECNDECKIIERNRRLTLGLQIENPDLCGKLIPKYSEYMRQWAKKDPVFCQMVHEKLTELVQLAKISKQKCRSYSFESMNRDKRHFVHESCEHFGCESQAYDQEPKRNIVATAVKDKCWLPSYSLMELLQRENGQRKVPGPMLNKSKTHSVDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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