Ekon060042.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010000005.1:4031123-4033657[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00074 0.28 13.5 2.2 1 23 92 115 92 115 0.96 2 15 0.063 24 7.4 1.8 1 23 143 166 143 166 0.93 3 15 0.015 5.8 9.4 4.3 3 23 230 251 229 251 0.97 4 15 0.02 7.5 9.0 2.6 1 23 280 303 280 303 0.95 5 15 0.87 3.3e+02 3.9 0.4 1 23 443 466 443 466 0.90 6 15 0.015 5.8 9.4 4.1 1 23 481 504 481 504 0.97 7 15 2.2 8.3e+02 2.6 1.6 1 23 514 537 514 537 0.93 8 15 0.0094 3.5 10.0 1.6 1 23 586 609 586 609 0.97 9 15 0.03 11 8.5 2.5 1 23 628 651 628 651 0.95 10 15 1.3e-05 0.005 19.0 1.3 1 23 657 680 657 680 0.95 11 15 0.0003 0.11 14.8 1.2 3 23 687 708 685 708 0.93 12 15 0.0008 0.3 13.4 0.4 1 23 713 736 713 736 0.97 13 15 9.7e-07 0.00036 22.6 0.6 3 23 744 764 743 764 0.98 14 15 2.8e-06 0.0011 21.1 1.6 1 23 770 792 770 792 0.98 15 15 3.8e-05 0.014 17.6 2.2 1 23 798 820 798 820 0.97
Sequence Information
- Coding Sequence
- ATGAAATTTGCACTAATTAAACATTTTTCTTTAATTTTCAGAATTCAGTTGAGCGGTGGTCATCAGCTAGTTTTCCAGAAAAAACTTGTAAAAATTAAACCTTGGCAGCTGGTACATCCTAGTGGAAATATAATCCGCGCTGGTTCTACAAAAATGGTCCAAGTAAAATATAATTCATCTCAAGTAGTTGGAAATAGCGACTTTGAAGAGGTGTCGATTGATGGCACTGAAGCTGTCAAAAGTGACACTAAAATTAGCAATGATATTGTTATATATATGTGTAGTATATGTAACAAATACTTTCCCTTAAAGCATATGCTTGAGGCACATAAATTAAAATACCATGAAAATACAGATAAAGAAGAAGATTCTACTCAAGGGGAACGAATTTTCTACGCAGGATACCATAAAGTTAAAAGTGGACAATATGTTTGTAACTACTGTCCCTTTCGATCCTCTAGACGTACAACTGTTTCTTCACATACAGTGAAAAAACATGCATCGCTCATAGAGAATAACACAAACTCTCAAGTTTCTCAAGAGGAGCTTGAGGATAATCAGGATGAGGCATATAAAGTTGAGATGTTAGACGATGACGATGAAGACGCTTGGCCAATGGAAATTGTTGAAGAACCCGAAGAGAATAAATTTGAGATTGAAGAAACCCAATCGAGGAAAAGGCGCGATTGTCCTTATTGCACCTTCTATACAACTAATAGTTCAACTTTCCACTCTCACATGAAAAGAAAACATCGTGATTATTGGAATGAATCTTTCGAAAAAAAGGTTGCCGATAGATTGGCCCTTGGGTCTATCAAAGTCTTGGACATACAGGAGTTCAAGTGTCGTTTCTGCCCATACTTAACTTCGAAAAGCAAAAGTTTACGTACTCATATGCTCGATAAACATAAGTTACTCGAGTCTGAACTCAACTCGAATATTGAATCAAAACTGAATGACGAAGAGACGAAGCAAAAGCATGGGCAACACTACGTAAGTGAAATCACTGAACTTGAAGAAATTGAAGAGATCGAAGAGATCGATGACCTAGGACGTTTGAAAAATACCTACGTTTTGATAGATGAGCTTGAGGTACATGATGCAACTTTAGAACAGATAGAAACTGATGCAGAATCAGACACTGCGCGTAAATCCCAAAAGTGTGCATACTGTCCGTTTGAATCTTGGATAAGCTCGACCATGCAGTCGCACATAGCACGTTGTCACCGAAATCAAAACCCATCGAATGAAGGTGATCAGCGCATTCTACAGTTACCATCATTGACCGAGAGCCGCAGACTTCCCAATGCCCAATTGTATACAGGCTATGCGTGTCATTATTGCACTTTCGTAGCGGCTACCGTGGCCAGTATAAACTCCCATACAGCTCGCCAACATCAAGGACAAAAACAACCTATAAAGGAAGTTCCAGTTAGCGAATATGATTGCGACCAATGCGACTACAAGTCAAGAAACCGACGCAACATGCAACTCCACGTAAAGCGATGTCACACCACCGAGGCTAACGCTGATGGTATGTTCTCCTGTCATGCCTGCTCGTATGAAACTTTGTCACGAATGGGCTTAAAAAGACACATATCCATCAAACATAACAAACCACGAAATGACGGAGGTACGAAAGGAAACTGTCATGAGTGTGACCAGTGCGAATTTAAATGCCTCAATGGCAAAACAATGGACTGGCATAAGAGACAACATAATGCACCAGACAATGCTGAAGACAATGGAAATAGTTATTTCTGCAATGACTGTGACTTCTCTACGTGGACGAAAGGACAATTATATTCCCACATTAAGCGAAAACACAGGGACGCAGATGGCAATAGCAAGGATGGTGAAGCTGAGTCGACAGATCATATATTTTCTTGTGAACAGTGTGATTATACAAGTAAAAATAAACATGTAATGAAAGTGCACGTGATAAGAAAGCATACGAATGATTACAATCACGAATGTGAGATATGTGGTAAAAAATACAAAATCAAAGCTGACCTGACGAATCACATACGGTTTCAGCACCGCGAACAGCCAATAATTTGTGACGTATGTGGGAAAACCTGTAGAAACAGCAATCTTTTGTATTTACACCAGAAATTTGCACACTACAAACCAGAGTTCGAATGCCCTATTTGTCATAGGAGGATGGTGAGTCAGGCAAATCTCGACGATCACATACTTAAACAGCATGAACAAAAGGAGGATGCTATATGTGACGAGTGTGGAAAAAAGTTTACCAAACAAGCTAGACTCAAGATACACATGAGGATACACACAGGTATCAAACCCTACACCTGCAAAGTTTGTCACAAAGCTTTCGCCAGAAGAAATGGACTTAGACAACATCTGCTAATTCACACGGGCCAGCGGCCTTATATTTGTGATATTTGCGGAAAGAGTTTTACTCAAAAGACAGGATTAATATGCCATAGGAAAAGCCATCCTGGGTCACATCCGCCTTTACCAAGAGTTACAATTGATCATGTGTTGTCAGATTTGTTAAACGAAGAATGTTAA
- Protein Sequence
- MKFALIKHFSLIFRIQLSGGHQLVFQKKLVKIKPWQLVHPSGNIIRAGSTKMVQVKYNSSQVVGNSDFEEVSIDGTEAVKSDTKISNDIVIYMCSICNKYFPLKHMLEAHKLKYHENTDKEEDSTQGERIFYAGYHKVKSGQYVCNYCPFRSSRRTTVSSHTVKKHASLIENNTNSQVSQEELEDNQDEAYKVEMLDDDDEDAWPMEIVEEPEENKFEIEETQSRKRRDCPYCTFYTTNSSTFHSHMKRKHRDYWNESFEKKVADRLALGSIKVLDIQEFKCRFCPYLTSKSKSLRTHMLDKHKLLESELNSNIESKLNDEETKQKHGQHYVSEITELEEIEEIEEIDDLGRLKNTYVLIDELEVHDATLEQIETDAESDTARKSQKCAYCPFESWISSTMQSHIARCHRNQNPSNEGDQRILQLPSLTESRRLPNAQLYTGYACHYCTFVAATVASINSHTARQHQGQKQPIKEVPVSEYDCDQCDYKSRNRRNMQLHVKRCHTTEANADGMFSCHACSYETLSRMGLKRHISIKHNKPRNDGGTKGNCHECDQCEFKCLNGKTMDWHKRQHNAPDNAEDNGNSYFCNDCDFSTWTKGQLYSHIKRKHRDADGNSKDGEAESTDHIFSCEQCDYTSKNKHVMKVHVIRKHTNDYNHECEICGKKYKIKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHILKQHEQKEDAICDECGKKFTKQARLKIHMRIHTGIKPYTCKVCHKAFARRNGLRQHLLIHTGQRPYICDICGKSFTQKTGLICHRKSHPGSHPPLPRVTIDHVLSDLLNEEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -