Basic Information

Insect: Eupristina koningsbergeri
Gene Symbol: Clamp
Assembly: GCA_018907245.1
Location: JACCHV010002904.1:9221362-9229804[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1e-05 0.004 19.3 2.4 1 23 166 188 166 188 0.98

2 8 0.00021 0.078 15.3 0.4 1 23 220 243 220 243 0.93

3 8 5.9e-05 0.022 17.0 2.6 1 23 342 364 342 364 0.97

4 8 8e-06 0.003 19.7 0.1 1 23 370 392 370 392 0.98

5 8 3.6e-06 0.0013 20.8 4.4 1 23 398 420 398 420 0.98

6 8 3e-07 0.00011 24.2 1.9 1 23 426 448 426 448 0.99

7 8 3.1e-06 0.0012 21.0 1.0 1 23 454 476 454 476 0.98

8 8 3e-05 0.011 17.9 0.6 1 23 482 504 482 504 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1e-05	0.004	19.3	2.4	1	23	166	188	166	188	0.98
2	8	0.00021	0.078	15.3	0.4	1	23	220	243	220	243	0.93
3	8	5.9e-05	0.022	17.0	2.6	1	23	342	364	342	364	0.97
4	8	8e-06	0.003	19.7	0.1	1	23	370	392	370	392	0.98
5	8	3.6e-06	0.0013	20.8	4.4	1	23	398	420	398	420	0.98
6	8	3e-07	0.00011	24.2	1.9	1	23	426	448	426	448	0.99
7	8	3.1e-06	0.0012	21.0	1.0	1	23	454	476	454	476	0.98
8	8	3e-05	0.011	17.9	0.6	1	23	482	504	482	504	0.97

Sequence Information

Coding Sequence: ATGGCTCTTGAATCAAATGATAGCAATGTGGTGTGGTTGAACACAACACGAGCAGATCAAATACAGAAGGGCCAACAAATCCACATACTTGTGAGGTGTTCCATGTTTACTCAAACAGAACCCAACAACAATAACTTTACTCAAATTGAACAAAACGCCAGCTACGCTGATCAACAGCAGCCCCAGCAAACAACAATGTTCGATCCTCAGCAGATCCAGCAACAGCAGGCTGCGCAGGGCCAACAGTCGCAGCAACAACAGACCCAACAAATGTATGTGACAAGTGACAAAAAAGAGGACAAATCTGGGCAACAATCAGCTACCACTGAATTTCCTTTCTATTATAACGTGAATATGCTGCAAAAGGTTCAAGCGAATGCAGTTGGCACGATTGGCGCCATTACTACTGATGATAAAGGTTGTTACCGTTTTGATGTACAACCTGTTGGTTATAATACCCTCATCAATCAGATGAATTTAGCTACAAATACAACTTTTAAGTGTGATATATGTGGACTTGTATTTGGTCACATGAGTTTACTAAATCATCATAAACGTATTCACAATTCAACACCAAGCAATTTGCAACAACAACCTCAGCAGGTAGTAGTTCAGACACCTACGACAGTGACTGTTGCAACCACTCCAGAAAGGCCATACACATGTGATGTATGCGGAGCTTGTTTTGCTTTACCAGGAGAATTAAAAAGTCACAAGACAAATATGCATCAGAAGCCTAAAGTGCAAATATGTGAAGATTGTGGAAGTGAAGATCCTTGTGAACATCATCCTACTAAAATTAAAAAAACTATTAAACCTGGTCATCATCCAGTTAAGCGACGTGGTGTCACTAGTGTAACCAAGTGTCACAAGTGCAATGGTACAGGCATCATTTTCATTGGTAAACACAACGAAAAACTAGATTCCGGAATCAGTTCCCTCGCTAAGTGTAGCGGCTGCAAGGCAACCGGCCGTATCATCATAGGAAGCGGAAAAGCAAACAGTCAACAGCAGGAGAAGCCGTTTCATTGTAACGTTTGCGATGGCACATTTTCAAGATATTCTTCATTGTGGTCTCACAAGAGATTACACTCTGGCGACAAACCGTTCAAATGTGAAGTCTGTGGTTTAGCTTTTGCTAAGGCGGCATATTTAAAAAATCATGGTCGAGTTCATACGGGCGAAAAGCCATTTAAGTGTAGTCATTGTGGAATGCAGTTTTCACAATCACCACATCTCAAGAATCATGAACGCATCCATTCTGGTGAGCGACCATATCAGTGTGAGGTTTGCGAGAAGACATTTGCTAGGCATTCAACTCTTTGGAATCATCGTAGGATTCATACTGGAGAAAAACCATATAGGTGTAATATCTGTGGAAGTGCGTTCAATCAAGCTACACACCTTAAAAATCATGCAAAGGTCCATACTGGAGAGAAACCCCACAGATGCGACATCTGCGAGATCGGTTTTTCCGATCGGTTCGCCCTCAAGCGTCACCGGGCGATCCACGAGAAGTACGGACAAACTGCCGCTCGCAATAGCAATGCCAATGCCAGTAATGCTCAGCAAGCTAACGCCAGTAGTCAACAACAAGCTCAACAGCAGCAAGCTCAACAGCAGCAGCAACAAGTAGTGGTGGTGAATGCGACGACCCCGGTGACAGTGAGCCAAGCCCAAGGCCAGGCGGTTATGCTCGAAGAGGTGTACAAGTGTCAAGTCGCTTTCCCGGAACCTAAATGA
Protein Sequence: MALESNDSNVVWLNTTRADQIQKGQQIHILVRCSMFTQTEPNNNNFTQIEQNASYADQQQPQQTTMFDPQQIQQQQAAQGQQSQQQQTQQMYVTSDKKEDKSGQQSATTEFPFYYNVNMLQKVQANAVGTIGAITTDDKGCYRFDVQPVGYNTLINQMNLATNTTFKCDICGLVFGHMSLLNHHKRIHNSTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHNEKLDSGISSLAKCSGCKATGRIIIGSGKANSQQQEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSHCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTAARNSNANASNAQQANASSQQQAQQQQAQQQQQQVVVVNATTPVTVSQAQGQAVMLEEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00845407;
90% Identity: iTF_01524203;
80% Identity: -