Ekon057524.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010002888.1:794989-799580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 4 9.9 0.3 6 21 12 27 6 28 0.86 2 14 1.5 5.8e+02 3.1 0.0 3 20 35 52 33 53 0.92 3 14 4.1 1.5e+03 1.7 0.6 1 12 228 239 228 248 0.81 4 14 0.061 23 7.5 0.7 1 20 371 390 371 392 0.94 5 14 3.8e-05 0.014 17.6 0.3 2 23 397 418 397 418 0.98 6 14 0.0052 2 10.9 1.5 1 23 429 451 429 451 0.95 7 14 0.085 32 7.0 0.1 1 23 470 491 470 491 0.93 8 14 0.00095 0.36 13.2 0.1 2 23 497 518 496 518 0.95 9 14 3.7e-05 0.014 17.6 4.8 1 23 576 598 576 598 0.99 10 14 4.5e-06 0.0017 20.5 5.0 1 23 604 626 604 626 0.98 11 14 9.8e-05 0.037 16.3 4.6 1 23 632 654 632 654 0.98 12 14 1.1e-06 0.00042 22.4 0.8 1 23 660 682 660 682 0.98 13 14 0.00035 0.13 14.5 0.5 1 23 686 708 686 708 0.98 14 14 0.00031 0.12 14.7 0.5 1 23 716 738 716 738 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCCATAAGCCTAATATGTCCTATGTGTTGTGGGGAGACTTTTAATAACTCCGAGTCTCTCAAGTACCACCTATTGAGTATGACTGACAATTTGTTTTGCCCTGGCTGCTCATTGAGGACTTATTCAGTAGCTGCACTAATACAACATTTAGATTGTTGTGGAAAGGAAATAGATCAGGATGAAGATCAAAAAGATACAGAAATAAACTCTAATCAATTAGAAGTTGAGGATAATGATAATGAAGGACCAGATATTTTAATGGATGATAATGATGATGGTATTAATGAAAGTTTTTTGGCAACTGTCAATGAAGATGGAATAATGATTGTTGGTGAAGGTAGAACAATTCAAGTAGATGAAAATGGTGACATTCAAGTTTTAGAAAAAATAAATGATGAAGAAACTATGTCTCTTGTAAATTCTGAAAAAATGATGACTAATACAGAAATTGAAATTTCTGAGTCTTCTGATTCATTGAGACCCAATAATTCTTTAAGCCCCAAAAAAGTAGACTCTATATCAAGTATAGTTGATACTTCTGAATTATTAAATGAAGATGAAGCTACATTAATTAGTATGACACATGTTGATGCCATTCAATTTGATGATTGTGATATTCTCAAAATTAAAAAAGAAAGTGATGAAACAGAAAAAGAGCAGGAAACAGATATAATGTATACTTGTAGTTCTTGTAGTGTGAGTTTTAATTCTGTACTAGAACATATCAAAAAATACCACGATGGACAAGAAGTTGTATTAGAAATGGCTGAACAACAAATAGATGAAATACAATCAACAACGGCAGAAACAATACTTTCATCTCCTGTTATTACAAGTGCACCAGTACAGATAACAAATAATGCTGTCCAAACTACTAATATTCCATCGAAGCAAAGACAATTAATGAATACATTAAGAACTGAGGAATGCATTGATAGTGATGGAAGATTGTATACAAGAAAAGTTGTACAAATTGAAAGATTTTGGGATAGAACTCCAGTTACTTTATCTTCAACAAAAGCTCCAATGATTGAGAAATTTTTTTCTAATGTTGAAGGAGTTAAGGTTAGAGATAAAAGTGTAACAGTTGCTCCAACTCGAATGTACAGATGTAATCAGTGTTTAGAACAATTTGCTAAATTGGGTGATTTTCGCATACATGTGTGCCTTCAAGGAAATAATCGTTGTGATCAATGCGATCAGACATTTGCAACAGGAAAAGCATTACAAATTCATATGAAAGTTCATGAAAATAGTGACTTTCCATCTCAGAAAATATTTTTATGTCCTGTATGTGGGACCGAATTCTTAACACATAAAAGTTTACGATTACATTCAAGAATGCATGCTCCTGTTAGGGCACGGCACGTTGAGGCACCAGAGGGTACTGAAGAAGAAACTTTTGTTTGCAATGAATGTGGAACGATCCTCTCGGAGTCGTACAGGACGGCACACATGGCTCTTCACGCTGGCGATACAATTACGTGCTCTGTCTGTAATCGGAAGTTCGACTCCGCAGAAAGTTTATCAATGCATGCGGCTGTCCACACAGAGATAAATACAGGTTTATCAGGAAATGCCACCGGTGTCGAACTGAATATCACCGGGTCTCAAAATAATACTGACTCGATATATATGAATGTCGATAATGGCGCAACAACGAATTCAGGAGTCGGTGCCTCGGCGATGGACACCCCCGAGGTTCAAAGCCAAAAGCCTTATCAGTGCCAACACTGCGGACGGAGATTCACGAGACCACACGAGAAGGTCAAGCACGAGAGGATACACACTGGTGAAAAGCCACATTCTTGCGAAGTCTGCGGAAAGAAGTTCCGGGTGTCCTACTGCCTCACCCTGCACATGCGTACTCACACAGGTGTGCGTCCGTACGAATGTCAGCATTGCGGGAAGCGTTTCAAAGCTTCCTCCGTGTATAACCACCACCTCCTGACCCATGGAGAGGAGCGCGCCTACACCTGCCCTTATTGCCCGAAGACCTTCAAAACCCGGGTGCAGCTCGCCGGTCACAAGAACAGTCACACCAAGCCCTTCCACTGCACCGTCTGTTCGCGGCCTTTCGCCTCTCTCTATGCCGCTAGAGCCCACATACAGACTCACAAGAAGGACAATAATCTCAAGTTCAGTTGCAGCATTTGTGGAGCTTCTTATGGAAGGGCCTTTGCTCTCAAGGATCACGTCAAGCATCACGAACGAGAAAACGCAGCCGTCCCACCTGAACCCGCACGCGAAGAAGAGGTTCAAGAAGTTGACAATTTCATTTTGCACGACGATGAGGAGGTGGACGACGACGAGCTAATCGTACCCTCGCCCCCACAGACCTTACCTCTTGTCGGGGTTCCAGCACAAGTCATACACGAGGGATGA
- Protein Sequence
- MGSISLICPMCCGETFNNSESLKYHLLSMTDNLFCPGCSLRTYSVAALIQHLDCCGKEIDQDEDQKDTEINSNQLEVEDNDNEGPDILMDDNDDGINESFLATVNEDGIMIVGEGRTIQVDENGDIQVLEKINDEETMSLVNSEKMMTNTEIEISESSDSLRPNNSLSPKKVDSISSIVDTSELLNEDEATLISMTHVDAIQFDDCDILKIKKESDETEKEQETDIMYTCSSCSVSFNSVLEHIKKYHDGQEVVLEMAEQQIDEIQSTTAETILSSPVITSAPVQITNNAVQTTNIPSKQRQLMNTLRTEECIDSDGRLYTRKVVQIERFWDRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLGDFRIHVCLQGNNRCDQCDQTFATGKALQIHMKVHENSDFPSQKIFLCPVCGTEFLTHKSLRLHSRMHAPVRARHVEAPEGTEEETFVCNECGTILSESYRTAHMALHAGDTITCSVCNRKFDSAESLSMHAAVHTEINTGLSGNATGVELNITGSQNNTDSIYMNVDNGATTNSGVGASAMDTPEVQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFHCTVCSRPFASLYAARAHIQTHKKDNNLKFSCSICGASYGRAFALKDHVKHHERENAAVPPEPAREEEVQEVDNFILHDDEEVDDDELIVPSPPQTLPLVGVPAQVIHEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304593;
- 90% Identity
- -
- 80% Identity
- -