Ekon033867.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010000109.1:404608-419193[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.27 1e+02 5.5 3.7 1 23 343 365 343 365 0.94 2 18 0.11 41 6.7 2.0 2 23 410 431 410 435 0.87 3 18 0.25 93 5.6 2.4 2 19 492 509 491 509 0.96 4 18 0.083 31 7.1 4.1 2 23 565 586 564 586 0.96 5 18 0.0014 0.52 12.7 3.0 1 23 591 613 591 613 0.98 6 18 0.018 6.8 9.2 0.4 1 21 620 640 620 644 0.92 7 18 0.00037 0.14 14.5 1.8 1 23 724 746 724 746 0.97 8 18 8e-05 0.03 16.6 3.6 1 23 791 813 791 813 0.97 9 18 6.8e-05 0.025 16.8 1.4 1 20 818 837 818 839 0.95 10 18 0.099 37 6.8 0.5 2 23 850 871 850 871 0.97 11 18 5.4e-05 0.02 17.1 1.0 2 23 909 930 908 930 0.96 12 18 3.4e-06 0.0013 20.9 2.0 1 23 935 957 935 957 0.96 13 18 4.8e-05 0.018 17.3 2.0 1 23 963 985 963 985 0.98 14 18 1.3e-06 0.00049 22.2 0.4 1 23 1001 1023 1001 1023 0.95 15 18 2.8e-07 0.0001 24.3 0.6 1 23 1029 1051 1029 1051 0.99 16 18 7.5e-06 0.0028 19.8 0.2 1 23 1057 1079 1057 1079 0.98 17 18 0.00011 0.042 16.1 4.1 1 23 1085 1107 1085 1107 0.96 18 18 0.0079 3 10.3 0.4 1 20 1113 1132 1113 1134 0.89
Sequence Information
- Coding Sequence
- ATGGATGCAGTAGACGTTTTGCAACCATTATTGTCGAAAGAGAATAAAGTGGGCATGATATCAGAACACGTATTAGATATATGCCGTTTTTGTTTAATTAATAATCCTATGATGCGAAACTTGTTTCATGTAGATGATGTTTTATCACTTGCAAATAAGGCAATGAGTCTTACAAGTGTAAAGATATCATCTGAAGATGGTTTGCCTTCTCATATTTGCTGTACTTGCATTGACAAACTGGAATCATCATATAAGTTCAAATTGCAAGTGGAAGAAACAGATAACATATTGCATCAGAGACTGAACTCATTAAACATTAAAGAAAATCTTTTTACTAATAACATAGATGATAATACATGTAATTATAGACATATTAAAGAAATATCAGAGGAGGATTTACTTTTGAAAGATCACACAGATTTAATAAATATTCAAAATGTAAATGAGCGAGAAAAACAAGAAAAAAATAATATGAAACACCAAAATCTACAAAAGCATGAAAATAGAAAAGATAATCATAACTTAAATAAAAAAGAAGCAAATAATATTGTTCTACATAAAAATTTATCACAAATTCACAATGATGAGCAAATTTGTAATCCAGAAAATGAATTACAAGAAATATCAGGTGAACAGCATAATCATTCGTTTGAAGCAGAGGTACTACATGATATAGTGTTACATGAAATTAATAATGAAGAAAGAATTCAAGAATTAAATCAAGTTCATCATTTAACAATGTATGAACATAATTATGTAGCAGAATCACATCTATGTAACAGGACAAATGAAAATAGTTCATTAAATTCACAGGTGGAATTAAAAGAAGATAACAAAAAAAGCATCCCCAACAATCTGTATAATATTAATCTTCCAGAAGAATCTTCACAAAGTAAAGTAACTGGAAGTGTAAACAATTCAAGAAAAATTCTTAGTAATGAAGATTTAAATGAAAGTAATTATTTTGAAAATCTTAATCTAAGTTCTAGATTAAAAGTTCAATCAGAAAAATCAGAAAAGATTTTTTTTATATGTTATCTGTGTGATAAGCATTTTTTATCAAAGAAAGTTTTAAAAGAGCACATGTATTTTCATGAAGAAGTAAGAAAAACTCTTTCTTTTATGAAAAATGAAGAAAAGAAACTGGAAAAAACATCACGGAATTCTGAAAATATTGATATGAATTCAACTTCATTAAAATCTCTTTCAAGTGGAAAACATCCAAATACTTGCCCTCATTGTGGAAAAGAATATTTATATATAATATCATATAACAAACATTTAAAGCAGCATGAGAAAGGCCATATTAAGGAAGACATACCTTTAGAAACCTCTTTTCATGAAGATGGTAACATGCCAAATTGGGAAGAATACAATGAGAATACCTCAAGTAAATGTGTAAGAAAAGAAAATGAGAACCAAGATAAAAATAAAATTGAAGTAAAAGATGAAATTAATATTAATGATACTATAAAATGTAATACTTGTGAAAAAGAATTTCATTCAATACATAAATTAAACAATCACGATGTGGATCATGCTATTGAAAGTATACATACTGAACAGGATTTAAATGCAATTCAATCTAAAGTTCAAGAGAAATCTATCAAAATTAAGAAAGATAATTCAAATATCGATCCAGTTAAATTTAATAAATCATTAATTAGCATGGAAGTTGAATCGAGGAACCTGAAATGCCCTCATTGTTCGTCAATCTACTCTCACAAAAAATCTATTGCTAGACATACAAGTAGTCATGGTATCAAAAAGTATACTTGTAAATTTTGTAATGAAAACTTCAATGAAAAAGAATATTTATTTCAACATACGAAGGAACATACTGACGGATCAAAAACCTTCAAATGTACGCAATGTAACAACATTTTTGATAATGAACTTACTTTAAGAAGTCATATAATAGCCACAACTCATAAAACGATATTGTACGGAAAGGAGTATGATTTGAACAAAAGAGTAAAAAGGGTAGCTGCTAGAGCAGCTCAAAAGATCATTGATCAAATAAAAATAGATCTTAATCTTGATGATGAATTTGAGGAAAACGAACGAAAAAAACTAAAAGATATGGATTTTAATGCAGAAGAAGCAGAATCTTTTGATGAAAAAAATGATGATATGGGACTGAATAAATTGCACAACAAATCTTTAAAATTTAGCTGCGCCACCTGCAACCAAAAATACGTGTCAAAACATGCACTTATAAAACATATGGAACAACATGTAAAGGATGAAACTTTGGTCAAATCAGAAATATTAAAAAATAATGACAAGTATCAAGAGAATCAAAAGAAAGAAGATGATGATATAGATGATGATGATTTTGAGAGTGGTCTCGATTGGCTTATTGATAGTTATGAATGCTTCACTTGTAAAAAACGTTACAGTACAAAAAAATCTTTATTACGTCATCAATTATTACACGAAGAACCAAATTTTCAGTGTGATATTTGTAATACAAAGTTTTATAGAAAAGACAAATTAAAAGCTCACTATGATAAATGCTCAGAGAAAAATCCCGATCAAGTGCGTAAATGTAATATTTGTGGTGATGATTTTGAAAACAACGAAATTCTCAGAAAACATAAAATAAAACATGTAACAGAAGGAATATTAACAGAGGAGGATCTCCAAGAAATCGAGCCCAGACCAAAAGAAAATAATGAAGAAAAGATACCACGTAAAAGACGAACGGATATTGTAGGTCTCGAATGCAGAGAATGCAAAAAACGCTATACTTCTAGAAAAGGATTACTGAGACATATACAGGTACACGAAGGAAAAAAGTATCTGTGTGACATCTGTCCAAAAAAATTCTACAGGCGAGAGCATTTAAAAATTCATATGGCTAAACATAACATGATTAAGCCATACAAATGCCCTCGATGTACAAAACGATTCATTAAAGAAGAACAATTAAATACTCATCTCACTAAACATGACAGAAGTTTCAAGAAGCTAAAGGAAACTGATACTTCTAAAAGATTTCTATGTGAGATATGCTCGAAAAGTTTCACTCAATCTACAACACTTATAGCACATTTACGAGTTCATAACGGTATTAAGCCTTACGTTTGTGAAGTGTGTTCAAGACCATTTACAACAAATGCTTATTTAAAAATGCACATGAGAACACATACGCAAGAAAAACCCTATGTTTGTCAATATTGTTCTAGAGCATTTGCTAGAGCTGATACTTTAGCAAATCATTTAACTACGCACACAGGAGAAGCTAAATATCACTGTAAATATTGTCCAAAAAATTTTAGAAGGCTTAAATCTTTAAAAGAACACGTTTTTATTCATACTGGGCAACGACCATACGCTTGTCCTACTTGTGATAGAAGGTTTAACAATAATGGTAGTAGATATGCGCATAGTAAACGATGTAAACAAAATTCACTTAGAATCCGAGATTCTTCACATAACTCTTCAATTCTCAAAACATCGGTTGAACGAGAACTAGAAGAGCAAGAACAACAAGAGCTGCACGACCCATTTCAATCGGAAAGGTTAAATGAAACTACAATTGAGCAAGCTCAGATTATCAAACAACAAAGTATAAAAACCTTTACAATTACAAGACCAGATGCTCGTCTTCATCAATCGCGTGTTATGGGTAATCAGGAAATTTTGATGCCTTTAATATTACCTCTCACGGTAACTTTAACAGATGTTGGCGAAGAAGTTATTCTTCCTGAAGGAACAAAAATTTTCACAACATAA
- Protein Sequence
- MDAVDVLQPLLSKENKVGMISEHVLDICRFCLINNPMMRNLFHVDDVLSLANKAMSLTSVKISSEDGLPSHICCTCIDKLESSYKFKLQVEETDNILHQRLNSLNIKENLFTNNIDDNTCNYRHIKEISEEDLLLKDHTDLINIQNVNEREKQEKNNMKHQNLQKHENRKDNHNLNKKEANNIVLHKNLSQIHNDEQICNPENELQEISGEQHNHSFEAEVLHDIVLHEINNEERIQELNQVHHLTMYEHNYVAESHLCNRTNENSSLNSQVELKEDNKKSIPNNLYNINLPEESSQSKVTGSVNNSRKILSNEDLNESNYFENLNLSSRLKVQSEKSEKIFFICYLCDKHFLSKKVLKEHMYFHEEVRKTLSFMKNEEKKLEKTSRNSENIDMNSTSLKSLSSGKHPNTCPHCGKEYLYIISYNKHLKQHEKGHIKEDIPLETSFHEDGNMPNWEEYNENTSSKCVRKENENQDKNKIEVKDEININDTIKCNTCEKEFHSIHKLNNHDVDHAIESIHTEQDLNAIQSKVQEKSIKIKKDNSNIDPVKFNKSLISMEVESRNLKCPHCSSIYSHKKSIARHTSSHGIKKYTCKFCNENFNEKEYLFQHTKEHTDGSKTFKCTQCNNIFDNELTLRSHIIATTHKTILYGKEYDLNKRVKRVAARAAQKIIDQIKIDLNLDDEFEENERKKLKDMDFNAEEAESFDEKNDDMGLNKLHNKSLKFSCATCNQKYVSKHALIKHMEQHVKDETLVKSEILKNNDKYQENQKKEDDDIDDDDFESGLDWLIDSYECFTCKKRYSTKKSLLRHQLLHEEPNFQCDICNTKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDDFENNEILRKHKIKHVTEGILTEEDLQEIEPRPKENNEEKIPRKRRTDIVGLECRECKKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHMAKHNMIKPYKCPRCTKRFIKEEQLNTHLTKHDRSFKKLKETDTSKRFLCEICSKSFTQSTTLIAHLRVHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQEKPYVCQYCSRAFARADTLANHLTTHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNSLRIRDSSHNSSILKTSVERELEEQEQQELHDPFQSERLNETTIEQAQIIKQQSIKTFTITRPDARLHQSRVMGNQEILMPLILPLTVTLTDVGEEVILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -