Basic Information

Gene Symbol
ncor1
Assembly
GCA_018907245.1
Location
JACCHV010000011.1:986267-997768[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.4 1.2e+04 -1.7 0.1 31 39 304 313 301 314 0.80
2 2 1.6e-08 5.8e-05 24.9 0.0 3 43 476 516 475 519 0.96

Sequence Information

Coding Sequence
ATGAGACAAAAAAAAACTTTGTTTGAGACTGATTTTAATGCGTTTCAGGTTAACGAGCGAGTGGCGATAAGCGTCAGTAGCAGTCCCGTTTCCTCACAAGTAGTCGGCGTCGGCAGTGAATACGTGGTGAGCGGTCGCGGGGAGCGACCTCGAATATCTTTGCTCCCTGCGCCGGCTTCCATCGCACCCGCGGCATCGCCGACCGCGCCCACGGATTACCACGCCGCAGCAGCACGCAACAATCGCAGCGGCCCCGGGAGCGGTGGACCTGCCATCCTGGCGATGCAGCCCCAGGACTATCGTCCGAGTCCCGTGGACATGGCCCAGATGCAGCAGGATGCGCCACCCTTCAAAAAGATCCGCCTCGGACAGCCCGTTCAACAACTGCCACCGACTCAGCAGCAGCAGTCGATATCGCAGACGGAGTGCCAGAGGATCACGAGTGCGCAAGACACTCTGATGAAGCAAAAGCATGTGCAACAGTTGCAGCAACCACTCAGGATAGATACGAGGCCAACAGCGGGTGTTTATACACCTCAAACGGAAGCGATTTCGCCAACCCTTCCAGAGCCTAACACACAAGAGGATGCGGCATTTAGGAGTACCAAAGACGATCTCCTTCAGCAGATCGCCAAAGTTGATCGAGAAATTGCTAAAAGGGAATCTCAGATTAGTAAGCTCCGGAAAAAACTTAAAGAGTTGGAAGAAGTTGCTAACAAACCCTTGGAAGCACCCGGTGCTAAGCGGCCTGTCGAGGAAGCTTCTCTGCAACCTAAACATCAGTCGCTTGTACAAAAAATTTATGCTGAAAATAGGAAAAAAGCGGAAGAGGCGCACAGGCTTTTGGAGAAACTAGGTCCAAAGGTGAAATTGCCGCTTTACAATCAACCTTCGGACACAAGTGTGTACCAGGAGAACCGCACCAGGCATCAATGTATGAAGGCGCGCCTCGTAGCCAGACTGCGTAAGGAACACGCGGAGCGTGCCTCCCTTCATCGCCAACAATCCCAGACGTACGCGATCCTCGTGCAAGAGTGGCACCGCAAGGTAGAGAAACTGGAGGCGACCCAGAAGCGCAAGACTAAGGAGGCCAAGAACCGGGAGTTCTTCGAGAAGGTCTTCCCGGAGCTGCGGAAACAGCGCGAGGACAAGGAACGTTTTAATAGGGTCGGAGCGCGTATTAAAAGTGAGGCTGATTTGGAAGAGATTATGGATGGGCTGCAAGAGCAGGAGGAAGAGTTGTCGACCGAGTTAAAAAATGCGTTGAAAACTCATCAGATGGAGGACAAGAAGATGCGTTCGTATGCTGTGATCCCGCCGCTCTTATTGGACGCCAAGCAGCGGAAAATCGCATTTCAGAATCGCAATGGCCTGCTGCAACCGGAGGAACTCGAAGCGTTGCACAGCGAGAGGAAACTCATCAACGTCTGGAGCACCACGGAACATGATATGTTTAAGGAGAAGTATCTCCAGCATCCCAAGAACTTTGGGGCGATAGCTCAATCGTTCGAGCATAAGTCTGTTGCGGACTGTGTGCATCACTACTACCTCACTAAAAAAGCGGAAAATTATAAGCAGCTACTGCGGAAGTCGAGGCGTACGCGTAGTTCTCGAAACAATCCTAACAATAAGGTAAATAATAGTAACTCCACTATCGGACCTATAGATATATTAACGACAGGAGTAACGACGAGGCTGCAGCGTGAGCAGCAACAGAAAACCCAAGAAAATCCTCAAAGTAGCTCGGCGGCGGCAAGTAGTAGTAGCAACGCAACCACGACGTCGACCCCATCGACGACTACCTCCTCGTCATCATCAACGTCGGTTACGAATGCGAGTTCCAACAGCACGACGTCATCCTCATCTGGTGCCGCCGTTGCTGCAAGTTCGTCTGGTAGTAGTATTGCCGCAAGCACGAATTTAACCTCGGAATCCTTGCCGACGACGGCGACAACGACACCTACGACGTCGACAACGATAACCGCCAAGGACGCCCGTGAAGCAAATAAGGAGAACAAGGAGATTAAAACAGAATCGAAAGATTCGTTACTTCTCAAAGATATCAAAGAAGAATCGCAGTCGAGTATCGAGACACTTTCTAGCAGGGAAATAAAGGTCGAGGGTAAAGGTGCTTTGTCTTCGTCGTCGAACACGAGCGTAACGAATGCCAACAACACGAGTAGCAACATACAACTTGAGCTACAACAAAAGGACAAGAAGAAAAATGCATGCATCACTGGAGGTTCAACAGTCACCAGCAGGTCGAAAGATAAGAAAAAGGAGAATCATGCAACGCCTATGGAAACTAGTGACGAAGAGGCTCAAGCCATGGATGCAACGGATCGTGATTTCCGAGCTTTAGAAGCACTAGAAATGCACTTTAAAGTAAATTAG
Protein Sequence
MRQKKTLFETDFNAFQVNERVAISVSSSPVSSQVVGVGSEYVVSGRGERPRISLLPAPASIAPAASPTAPTDYHAAAARNNRSGPGSGGPAILAMQPQDYRPSPVDMAQMQQDAPPFKKIRLGQPVQQLPPTQQQQSISQTECQRITSAQDTLMKQKHVQQLQQPLRIDTRPTAGVYTPQTEAISPTLPEPNTQEDAAFRSTKDDLLQQIAKVDREIAKRESQISKLRKKLKELEEVANKPLEAPGAKRPVEEASLQPKHQSLVQKIYAENRKKAEEAHRLLEKLGPKVKLPLYNQPSDTSVYQENRTRHQCMKARLVARLRKEHAERASLHRQQSQTYAILVQEWHRKVEKLEATQKRKTKEAKNREFFEKVFPELRKQREDKERFNRVGARIKSEADLEEIMDGLQEQEEELSTELKNALKTHQMEDKKMRSYAVIPPLLLDAKQRKIAFQNRNGLLQPEELEALHSERKLINVWSTTEHDMFKEKYLQHPKNFGAIAQSFEHKSVADCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKVNNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQSSSAAASSSSNATTTSTPSTTTSSSSSTSVTNASSNSTTSSSSGAAVAASSSGSSIAASTNLTSESLPTTATTTPTTSTTITAKDAREANKENKEIKTESKDSLLLKDIKEESQSSIETLSSREIKVEGKGALSSSSNTSVTNANNTSSNIQLELQQKDKKKNACITGGSTVTSRSKDKKKENHATPMETSDEEAQAMDATDRDFRALEALEMHFKVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01379941;
90% Identity
-
80% Identity
-