Equa032182.1
Basic Information
- Insect
- Euplagia quadripunctaria
- Gene Symbol
- -
- Assembly
- GCA_963859945.1
- Location
- OY982589.1:4493718-4502277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.3 5.3e+02 2.4 3.3 1 23 181 203 181 203 0.90 2 14 5.6 5.6e+02 2.3 0.3 3 11 240 248 239 252 0.87 3 14 0.055 5.5 8.6 3.0 1 23 260 285 260 285 0.93 4 14 0.0044 0.44 12.1 0.8 2 23 302 324 301 324 0.94 5 14 0.045 4.5 8.9 0.3 2 20 362 380 361 385 0.92 6 14 1.6 1.6e+02 4.0 1.1 1 20 386 409 386 411 0.86 7 14 6.5 6.5e+02 2.1 2.4 1 23 662 683 662 683 0.91 8 14 1 1e+02 4.6 3.8 1 23 694 716 694 716 0.93 9 14 0.62 62 5.3 0.6 2 23 722 743 721 743 0.92 10 14 1.7 1.7e+02 3.9 0.6 1 23 765 786 765 786 0.90 11 14 0.0041 0.41 12.2 1.3 3 23 834 854 834 854 0.95 12 14 0.00012 0.012 17.0 0.2 2 23 870 891 869 891 0.96 13 14 8.4e-07 8.4e-05 23.8 2.3 1 23 897 919 897 919 0.98 14 14 0.00085 0.085 14.3 0.3 1 20 924 943 924 945 0.96
Sequence Information
- Coding Sequence
- ATGCAAGACAAAAAACCACGTCTTGCTTCAACAACAACACATACGTATGATGACTTTGAAGCTCTTATTGATTCTCAAAATAAGCCTAAAGAAGCGGACCCATCAAAATTAGAATTTTCCGTAACTGTAGCAGTCGAAGAGTTTGATGAGGATAGCTCAGATTTAGTTATTATTGAACCAAAAGAACAGACTCCTGTAGAAATAATATCTTCTGACTCAGAAGCAGATGACAGAATTGAAGATAATACCAAAAGCCGGGCTTCTGTTAATAATACCAATGAATATGTAATTGAATTACCTGGAAAGTTACCGGAAGAATTAGTGTTAGATAGAAATGAAATATTGAATGCTGCAAATGAAATATTAGAAAATCCAGGGAATATTGCTGACAGAGTTCTTGGTATTGAAGTTAAAAACTGTATTGGAAAGTTCCGTACAAGTTTCGAAGATAAACTTGAGGGTAAAATTCAACGCGTGTTGCTCCAGTGGTTAAATTGGCAGAAATTAATTGAATATAAGTCCAGAAGCTCGCCCTTGTTCTACAAatgttatatatgtaaaaaatcttGGTGGTATCTACATGATTTTcgagaacatttaaaaaatcatgctGAATTGAAACTGGATTTAGAAGAATATACAATGCATGAAGCAAATATTATCGCTTATTTAAAAGTTGATGATATTATTGATACTGATTTTTATACAGAGGGAGATTGTCCAAAATGTGGTTACGATTTTGCTTTACACAAATCTTCTTCTAGAAAAGACTCGATATATATCTGCAAAGTAACTAATTGTGATAAGTTATTTTCCACGTGTTTCGCTTTAAAAACTCATGAATATATGTTTCACACTGTCTCCGAGTTGACTGGTGAGGTACTAGAAACTGGAAAACGTATATACTGCAAAGTTTGCAGTTTTGTGTTCTATACACAAAAGTCATACCAATCTCACGTGAATTTGATGCACACTGTCCGGTCGGATTTAGTTGTTCCGATAATGCCTAAAATTTGTCCTCTATGCAAGGGAAAACTTTTGTTCGGGACCTATCATATTTgtgcagaaaaaaaaaccagagTACAGTGTAATCTTTGCTATAGGAGTTTCCAGCGAGGACCTCAGTTTAGAGCGCATATGGGCCAGAATGGACACTATAAGTGTAAAACCTGTGATGAATTACTGCCAAGAAAGTGTGTGGAAGCTGAACATCTTATGAAGCATACTGATAAATTTGTTATTGTGAAGAAATGTTTATTGTGCGAAGTTTTTACTGTGTTCTTGGACTACCAGACAGCTTTTGACCATATTTCTGTTCATTTGAACATGCGCTATGAAGGAAGCAACTTCAAATACATAAGCAACattctAATTCCAAAGTCATGTCTACTTCAACGTTTGGAACCTAATGTGGAAATAAAAGtgGAACAGAGGGACATCATTTTAGCTccagaattaaaaattaaacaagaaataatagATGGTTTCAAAAATGACGCAGGTGATGACGACGAAATACAAATCAAAGAAGAAATTGATATCCACGATAATTTCGAATCTCAACACAAGCAAGAACGTGACAGCAAAGTGGAAGAAGACTCGGATATTTCGAGAATATTCGGTATCAAAATGGAAGCAAGTGATATCGATATGAAGCAAGAAATGCAAGTTGACGAAGAATCTGAATATGAAGACGATATTATTAaactagattttaattttttcaacacAATGCAACAAGCCATGGAAGATTCCACGCAAGATTCCACGCAAGACTGTATTCAAAAGATGGAAGATACTACAGATGAATTCATGCAAAAAGCGCAAGAAGAAATGCAAGACGATGAAGCAGATACGCAAGACGATGAAGAATATATGCAAGACGGTGAAGAAGATATGCAAGACGGTGAAGAAGATATGCAAGACGATGAAGAATATATTGCAGAtggaaaaaatagaaaaaaatataaattgcctAAAATTTATAGATGTCGTAGATGTGGTTTTGATGCGGTACATAAAGAATATAGGGCTCATATGAAGTCGCACTGTCGTGAAAAAGTTTATGAAAGGACAAACTACACATGCACTAAGTGCTCAAACACTTTTGacacatttaataaattcattgaTCACTTTACTCAACATAACATCAGTCCATTATCGTGCCCGGAATGCTATAAACCATTTATATGTTACAAGACAATAGAGTTACACATCGAAACACATATAAAAATGACATACGTTACCGTTCAAACGAAGTctttaacaaagaaaaaagcaaatttttattataagtgtaAGCTTTGCGAGGAAACCGTTGAGAAGGTGGACTTCTTTGAACATTGGGAAAAGCATTTGGCGTTTGTGGAGAAGAAACCCGAGGATCTTGTGGAAGATGATAATATTTTAGATGCTAAGCGAATCAATAAGGAAATGCTGGAAGAATTGTTGGAGCGCCTCCAATCTCCAGAGCCAGTATTCAACATGAGAAGAGGCTGTCCAATCTGTGTGAGACACTTCGAAAGAAAAAACGACTACAAACGCCATCTGGTGGAACATCTTCTATGTCACGCGTACTCCCAACACTATTTGTACAAAAAACTCCAATGTCAGATTTGTGACAGTGGTTTTCCGAAACCGGATGACTATAAAAAACATATGAGGGACCATGGCGACCTACGAGATTACAAATGTCAAATTTGTGATAAATATTTCAGTGATTCTAGTAATTAcagtaaacatattaaattgCATAATAAAAATGCATATACCTGTGATATTTGTAAGAAGAAATTTCAAGCAAAGTTTTCTCTGGAGAAGCATATCGTGGTATAG
- Protein Sequence
- MQDKKPRLASTTTHTYDDFEALIDSQNKPKEADPSKLEFSVTVAVEEFDEDSSDLVIIEPKEQTPVEIISSDSEADDRIEDNTKSRASVNNTNEYVIELPGKLPEELVLDRNEILNAANEILENPGNIADRVLGIEVKNCIGKFRTSFEDKLEGKIQRVLLQWLNWQKLIEYKSRSSPLFYKCYICKKSWWYLHDFREHLKNHAELKLDLEEYTMHEANIIAYLKVDDIIDTDFYTEGDCPKCGYDFALHKSSSRKDSIYICKVTNCDKLFSTCFALKTHEYMFHTVSELTGEVLETGKRIYCKVCSFVFYTQKSYQSHVNLMHTVRSDLVVPIMPKICPLCKGKLLFGTYHICAEKKTRVQCNLCYRSFQRGPQFRAHMGQNGHYKCKTCDELLPRKCVEAEHLMKHTDKFVIVKKCLLCEVFTVFLDYQTAFDHISVHLNMRYEGSNFKYISNILIPKSCLLQRLEPNVEIKVEQRDIILAPELKIKQEIIDGFKNDAGDDDEIQIKEEIDIHDNFESQHKQERDSKVEEDSDISRIFGIKMEASDIDMKQEMQVDEESEYEDDIIKLDFNFFNTMQQAMEDSTQDSTQDCIQKMEDTTDEFMQKAQEEMQDDEADTQDDEEYMQDGEEDMQDGEEDMQDDEEYIADGKNRKKYKLPKIYRCRRCGFDAVHKEYRAHMKSHCREKVYERTNYTCTKCSNTFDTFNKFIDHFTQHNISPLSCPECYKPFICYKTIELHIETHIKMTYVTVQTKSLTKKKANFYYKCKLCEETVEKVDFFEHWEKHLAFVEKKPEDLVEDDNILDAKRINKEMLEELLERLQSPEPVFNMRRGCPICVRHFERKNDYKRHLVEHLLCHAYSQHYLYKKLQCQICDSGFPKPDDYKKHMRDHGDLRDYKCQICDKYFSDSSNYSKHIKLHNKNAYTCDICKKKFQAKFSLEKHIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -